Variant report

Variant	rs1863946
Chromosome Location	chr5:91139996-91139997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARRDC3-10	chr5:91139504-91140346	NONHSAT102766

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10035780	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs10036433	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10037243	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10038790	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10041028	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10064162	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10064422	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10064962	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10068803	1.00[CEU][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap]
rs10068811	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs10072732	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10079624	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11738756	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11741136	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11745311	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11955693	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12186928	0.83[ASN][1000 genomes]
rs12658380	0.92[ASN][1000 genomes]
rs13356872	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1427944	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap]
rs17590025	0.83[ASN][1000 genomes]
rs17590226	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1863947	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2367823	0.83[ASN][1000 genomes]
rs28742159	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35205291	0.84[ASN][1000 genomes]
rs55964699	0.84[ASN][1000 genomes]
rs72773370	0.84[ASN][1000 genomes]
rs72773371	0.84[ASN][1000 genomes]
rs72773387	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72773388	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72773393	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72773395	0.88[AFR][1000 genomes]
rs7716876	0.83[ASN][1000 genomes]
rs7732303	0.83[ASN][1000 genomes]
rs7736833	0.83[ASN][1000 genomes]
rs9293587	1.00[CEU][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882370	chr5:90986181-91287437	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882372	chr5:91018052-91221647	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1017504	chr5:91092920-91178854	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv830396	chr5:91121355-91343236	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91137400-91143200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:91137600-91143200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:91139800-91140400	Enhancers	HMEC	breast

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