Variant report

Variant	rs1867898
Chromosome Location	chr2:134519571-134519572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1037137	0.83[ASN][1000 genomes]
rs10496712	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1110672	0.81[AFR][1000 genomes]
rs12619884	0.85[EUR][1000 genomes]
rs1374396	0.81[AFR][1000 genomes]
rs1374400	0.82[ASN][1000 genomes]
rs1374402	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1446750	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1446751	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1446753	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1596917	0.82[ASN][1000 genomes]
rs1596919	0.82[ASN][1000 genomes]
rs16829241	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16829308	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16829326	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16829360	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16829441	0.84[ASN][1000 genomes]
rs2197605	0.84[ASN][1000 genomes]
rs2874486	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2874496	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4101466	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56714278	0.83[EUR][1000 genomes]
rs57830740	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60358627	0.83[EUR][1000 genomes]
rs72843293	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs731972	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs921088	0.83[EUR][1000 genomes]
rs971177	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134514200-134519600	Weak transcription	Fetal Heart	heart
2	chr2:134514200-134523200	Weak transcription	Ovary	ovary
3	chr2:134518400-134519600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:134518400-134522800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:134518400-134523000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:134518800-134523200	Weak transcription	Fetal Lung	lung
7	chr2:134519400-134520600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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