Variant report

Variant	rs1868508
Chromosome Location	chr3:54402077-54402078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12632768	0.80[CEU][hapmap];0.83[JPT][hapmap]
rs13327625	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449326	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs1449327	0.85[CEU][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes]
rs1449328	0.87[EUR][1000 genomes]
rs1449329	0.87[CEU][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs1449330	0.81[CEU][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs1473345	0.83[EUR][1000 genomes]
rs1473346	0.83[EUR][1000 genomes]
rs1473347	0.86[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs1868497	0.87[EUR][1000 genomes]
rs1868502	0.81[EUR][1000 genomes]
rs1868506	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1868507	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1975611	0.81[EUR][1000 genomes]
rs1992964	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2359789	0.85[CEU][hapmap];0.83[JPT][hapmap]
rs2359790	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs2359792	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2359793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4025912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4131315	0.83[JPT][hapmap]
rs4974369	0.83[JPT][hapmap]
rs4974370	0.80[CEU][hapmap];0.83[JPT][hapmap]
rs731507	0.84[CEU][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs7372444	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7372695	0.80[EUR][1000 genomes]
rs7429237	0.83[JPT][hapmap]
rs7431094	0.84[EUR][1000 genomes]
rs7648293	0.86[CEU][hapmap];0.88[JPT][hapmap]
rs9827201	1.00[CEU][hapmap];0.88[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830682	0.87[CEU][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs9836159	0.86[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs9841318	0.83[JPT][hapmap]
rs9851130	0.86[CEU][hapmap];0.83[JPT][hapmap]
rs9862712	0.86[CEU][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs9862718	0.86[CEU][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs9870407	0.85[CEU][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs9877288	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9877455	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9877529	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs9882299	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv817210	chr3:54365684-54511164	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54392600-54410200	Weak transcription	Ovary	ovary
2	chr3:54395400-54407800	Weak transcription	Hela-S3	cervix
3	chr3:54395400-54409000	Weak transcription	Right Atrium	heart
4	chr3:54401000-54409600	Weak transcription	Fetal Lung	lung
5	chr3:54401400-54406000	Weak transcription	Stomach Mucosa	stomach

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