Variant report

Variant	rs187056379
Chromosome Location	chr5:98089862-98089863
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032060	chr5:98022226-98093492	Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv537817	chr5:98022226-98093492	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv441958	chr5:98089585-98095969	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	esv3469594	chr5:98089607-98098682	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv514316	chr5:98089764-98095924	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3469595	chr5:98089797-98098555	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv3469597	chr5:98089849-98098525	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	esv3469598	chr5:98089861-98098516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98076800-98090600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:98085400-98091000	Weak transcription	HSMM	muscle
3	chr5:98088000-98090000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr5:98088000-98090200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:98088400-98090200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:98088600-98090000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:98088800-98090400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:98089000-98090200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:98089200-98090200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:98089600-98090200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:98089600-98094200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:98089600-98104000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:98089800-98090000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:98089800-98090000	Enhancers	Osteobl	bone
15	chr5:98089800-98090200	Enhancers	HSMMtube	muscle
16	chr5:98089800-98091200	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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