Variant report

Variant	rs187058241
Chromosome Location	chr7:6764591-6764592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr7:6764549-6765151	GM12878	blood:	n/a	n/a
2	EP300	chr7:6764463-6764924	GM12878	blood:	n/a	n/a
3	SPI1	chr7:6764530-6765000	GM12891	blood:	n/a	chr7:6764852-6764865 chr7:6764737-6764744 chr7:6764851-6764864 chr7:6764853-6764862
4	EBF1	chr7:6764527-6764921	GM12878	blood:	n/a	n/a
5	POU2F2	chr7:6764452-6764995	GM12878	blood:	n/a	n/a
6	RXRA	chr7:6764568-6764941	GM12878	blood:	n/a	n/a
7	TCF12	chr7:6764543-6764926	GM12878	blood:	n/a	n/a
8	TCF12	chr7:6764538-6765000	GM12878	blood:	n/a	n/a
9	BCL11A	chr7:6764490-6765004	GM12878	blood:	n/a	n/a
10	BATF	chr7:6764386-6765017	GM12878	blood:	n/a	n/a
11	PAX5	chr7:6764487-6764959	GM12878	blood:	n/a	n/a
12	FOXM1	chr7:6764580-6765181	GM12878	blood:	n/a	n/a
13	SP1	chr7:6764550-6765079	GM12878	blood:	n/a	chr7:6764943-6764950
14	PAX5	chr7:6764462-6764937	GM12878	blood:	n/a	n/a
15	BCLAF1	chr7:6764543-6765036	GM12878	blood:	n/a	n/a
16	TCF3	chr7:6764490-6764970	GM12878	blood:	n/a	n/a
17	PML	chr7:6764511-6765112	GM12878	blood:	n/a	n/a
18	NFIC	chr7:6764529-6765121	GM12878	blood:	n/a	n/a
19	SPI1	chr7:6764530-6765017	GM12878	blood:	n/a	chr7:6764852-6764865 chr7:6764737-6764744 chr7:6764851-6764864 chr7:6764853-6764862
20	ELF1	chr7:6764544-6764900	GM12878	blood:	n/a	chr7:6764853-6764864
21	RUNX3	chr7:6764553-6765169	GM12878	blood:	n/a	chr7:6764801-6764818
22	RUNX3	chr7:6764549-6765172	GM12878	blood:	n/a	chr7:6764801-6764818
23	IRF4	chr7:6764428-6765001	GM12878	blood:	n/a	n/a
24	NFIC	chr7:6764565-6765204	GM12878	blood:	n/a	n/a
25	SPI1	chr7:6764499-6765142	GM12878	blood:	n/a	chr7:6764852-6764865 chr7:6764737-6764744 chr7:6764851-6764864 chr7:6764853-6764862
26	PAX5	chr7:6764326-6765121	GM12878	blood:	n/a	n/a
27	IRF4	chr7:6764446-6764973	GM12878	blood:	n/a	n/a
28	ATF2	chr7:6764577-6765116	GM12878	blood:	n/a	n/a
29	SP1	chr7:6764537-6765102	GM12878	blood:	n/a	chr7:6764943-6764950
30	FOXM1	chr7:6764437-6765166	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
PMS2CL	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015277	chr7:6705439-7303195	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv887439	chr7:6736332-6791749	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015646	chr7:6738483-6779270	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv887440	chr7:6743097-6820508	Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv887441	chr7:6744957-6919214	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	esv1819001	chr7:6746810-6785602	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv8039	chr7:6748111-6764886	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv10861	chr7:6749172-6768435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv1819632	chr7:6749937-6767410	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv966755	chr7:6750289-6769785	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv966754	chr7:6750289-6838266	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv887442	chr7:6753286-6820508	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv887443	chr7:6753286-6832265	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv887444	chr7:6753286-6855510	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv887445	chr7:6758018-6843722	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv887446	chr7:6758018-6870635	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	nsv887447	chr7:6764583-6843722	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
18	nsv887448	chr7:6764583-6855510	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
19	nsv887449	chr7:6764583-6870635	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
20	esv2757207	chr7:6764583-6977214	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
21	esv2759504	chr7:6764583-6977214	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6747000-6768600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:6754600-6768600	Weak transcription	Liver	Liver
3	chr7:6763600-6766600	Enhancers	Primary B cells from cord blood	blood
4	chr7:6764000-6765800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr7:6764000-6766200	Enhancers	Primary B cells from peripheral blood	blood
6	chr7:6764200-6764600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:6764200-6765800	Enhancers	Primary hematopoietic stem cells	blood
8	chr7:6764200-6766200	Enhancers	GM12878-XiMat	blood
9	chr7:6764400-6765200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr7:6764400-6765400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr7:6764400-6765800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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