Variant report

Variant	rs1871209
Chromosome Location	chr16:80196025-80196026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:80192243..80194874-chr16:80195006..80196589,2	K562	blood:
2	chr16:80192745..80194874-chr16:80195006..80196730,2	K562	blood:
3	chr16:80194118..80196698-chr16:80201674..80203282,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11150248	0.84[EUR][1000 genomes]
rs11150249	0.85[EUR][1000 genomes]
rs11640831	0.81[AFR][1000 genomes]
rs11643917	0.88[AFR][1000 genomes]
rs12102804	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12716882	0.88[AFR][1000 genomes]
rs12926639	0.81[EUR][1000 genomes]
rs1382389	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16952546	0.82[ASN][1000 genomes]
rs1904186	0.81[AFR][1000 genomes]
rs2169804	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2169806	0.92[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28733382	0.81[ASN][1000 genomes]
rs4889112	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4889115	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4889116	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6564744	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7186149	0.81[AFR][1000 genomes]
rs7189918	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7193651	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7201276	0.80[AFR][1000 genomes]
rs7205467	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8045772	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8045952	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8047391	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs8060188	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8061813	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9673176	0.97[ASN][1000 genomes]
rs9673185	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9926605	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9930130	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9939067	0.80[AFR][1000 genomes]
rs9940589	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9944373	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80186600-80197600	Weak transcription	HSMMtube	muscle
2	chr16:80192800-80197600	Weak transcription	Pancreas	Pancrea
3	chr16:80193200-80199600	Weak transcription	A549	lung
4	chr16:80193400-80197600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr16:80193400-80197800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr16:80193400-80197800	Weak transcription	Osteobl	bone
7	chr16:80193400-80199200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr16:80193600-80197400	Weak transcription	HSMM	muscle
9	chr16:80193600-80197600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr16:80193600-80197600	Weak transcription	NH-A	brain
11	chr16:80193600-80197800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr16:80193600-80201400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr16:80193600-80207600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr16:80193800-80201400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr16:80196000-80196600	Enhancers	Fetal Lung	lung

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