Variant report

Variant	rs1871631
Chromosome Location	chr10:52922797-52922798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10740166	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10996069	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1904700	0.83[JPT][hapmap]
rs7897633	0.91[ASN][1000 genomes]
rs7905063	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7906944	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9414844	0.86[AFR][1000 genomes]
rs9415777	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9415788	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1871631	PRKG1	cis	cerebellum	SCAN
rs1871631	PRKG1	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52895200-52924000	Weak transcription	Fetal Stomach	stomach
2	chr10:52906000-52931200	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:52908000-52929600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:52908400-52929600	Weak transcription	Aorta	Aorta
5	chr10:52910000-52931000	Weak transcription	Fetal Lung	lung
6	chr10:52910600-52942400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:52917400-52929000	Weak transcription	NHDF-Ad	bronchial
8	chr10:52921600-52923000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:52922000-52922800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr10:52922000-52922800	Enhancers	Right Ventricle	heart
11	chr10:52922000-52923000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:52922000-52924200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:52922000-52927200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:52922200-52923200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:52922200-52927800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:52922400-52927800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:52922600-52923000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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