Variant report

Variant	rs1871794
Chromosome Location	chr3:99078606-99078607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1021081	0.81[AMR][1000 genomes]
rs1021082	0.81[AMR][1000 genomes]
rs11711371	0.81[AMR][1000 genomes]
rs11718186	0.81[AMR][1000 genomes]
rs12493841	0.83[AMR][1000 genomes]
rs12493876	0.85[AMR][1000 genomes]
rs13325971	0.85[AMR][1000 genomes]
rs13326810	0.81[AMR][1000 genomes]
rs1383847	0.94[EUR][1000 genomes]
rs1383856	0.81[AMR][1000 genomes]
rs1481529	0.88[EUR][1000 genomes]
rs1481543	0.81[AMR][1000 genomes]
rs1600780	0.92[EUR][1000 genomes]
rs1997405	0.86[EUR][1000 genomes]
rs2128025	0.92[EUR][1000 genomes]
rs2219970	0.81[AMR][1000 genomes]
rs2341817	0.81[AMR][1000 genomes]
rs2448966	0.88[EUR][1000 genomes]
rs2623318	0.89[EUR][1000 genomes]
rs2623376	0.89[EUR][1000 genomes]
rs2700586	0.93[EUR][1000 genomes]
rs2700587	0.92[EUR][1000 genomes]
rs2700599	0.92[EUR][1000 genomes]
rs2700635	0.88[EUR][1000 genomes]
rs2700647	0.90[EUR][1000 genomes]
rs2700648	0.90[EUR][1000 genomes]
rs2700667	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs2951493	0.89[EUR][1000 genomes]
rs4324495	0.81[AMR][1000 genomes]
rs6440580	0.81[AMR][1000 genomes]
rs6778214	0.81[AMR][1000 genomes]
rs6801835	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73134477	0.81[AMR][1000 genomes]
rs73134486	0.81[AMR][1000 genomes]
rs73138305	0.81[AMR][1000 genomes]
rs73141805	0.81[AMR][1000 genomes]
rs73141807	0.81[AMR][1000 genomes]
rs7429158	0.81[AMR][1000 genomes]
rs7631745	0.81[AMR][1000 genomes]
rs9756004	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9758342	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9813332	0.81[AMR][1000 genomes]
rs9833036	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9841436	0.81[AMR][1000 genomes]
rs9853583	0.81[AMR][1000 genomes]
rs9990265	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877216	chr3:99065296-99161022	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99075200-99084200	Weak transcription	HUVEC	blood vessel

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