Variant report

Variant	rs1872007
Chromosome Location	chr1:92667069-92667070
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 160 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs1014415	1.00[JPT][hapmap]
rs10159094	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1023041	1.00[JPT][hapmap]
rs10747503	0.90[ASN][1000 genomes]
rs10783109	0.80[ASN][1000 genomes]
rs10875204	0.80[ASN][1000 genomes]
rs10875209	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10875214	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10875319	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10875349	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11164288	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11164349	0.82[EUR][1000 genomes]
rs11164546	0.80[ASN][1000 genomes]
rs11165984	1.00[JPT][hapmap]
rs11166042	1.00[JPT][hapmap]
rs11166141	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11166144	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11166184	0.80[ASN][1000 genomes]
rs1157470	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11577572	1.00[JPT][hapmap]
rs11585255	1.00[JPT][hapmap]
rs11588044	1.00[JPT][hapmap]
rs11588153	1.00[JPT][hapmap]
rs11589858	1.00[JPT][hapmap]
rs11803457	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12024731	0.80[ASN][1000 genomes]
rs12086394	0.90[ASN][1000 genomes]
rs12119246	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1226183	1.00[JPT][hapmap]
rs1226187	1.00[JPT][hapmap]
rs12404806	1.00[JPT][hapmap]
rs12407622	1.00[JPT][hapmap]
rs12724638	0.90[ASN][1000 genomes]
rs12729867	1.00[JPT][hapmap]
rs12740246	1.00[JPT][hapmap]
rs12753920	0.90[ASN][1000 genomes]
rs12755781	1.00[JPT][hapmap]
rs12757533	1.00[JPT][hapmap]
rs12759512	0.90[ASN][1000 genomes]
rs1384612	0.90[ASN][1000 genomes]
rs1384613	0.90[ASN][1000 genomes]
rs1483022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1487536	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1487540	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1542685	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1601020	0.80[ASN][1000 genomes]
rs1601021	0.80[ASN][1000 genomes]
rs1601023	0.80[ASN][1000 genomes]
rs17519385	0.90[ASN][1000 genomes]
rs17519972	1.00[JPT][hapmap]
rs17578686	0.90[ASN][1000 genomes]
rs1982720	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2046620	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2069051	0.90[ASN][1000 genomes]
rs2087194	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2093879	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2128645	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2128646	1.00[JPT][hapmap]
rs2209337	0.80[ASN][1000 genomes]
rs2391114	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2391116	0.80[ASN][1000 genomes]
rs2391161	0.84[EUR][1000 genomes]
rs2839877	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2893200	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3103170	0.85[EUR][1000 genomes]
rs3103176	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3103178	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3103181	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3118137	0.90[ASN][1000 genomes]
rs3122321	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3122323	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3122327	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3131813	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3131814	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3131820	1.00[CEU][hapmap]
rs3131827	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3131828	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35015161	0.90[ASN][1000 genomes]
rs3851271	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3851272	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3851273	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3929737	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4261159	0.80[ASN][1000 genomes]
rs4393167	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4414050	0.90[ASN][1000 genomes]
rs4437922	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4623754	0.80[ASN][1000 genomes]
rs4658127	0.80[ASN][1000 genomes]
rs4658128	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4658129	0.80[ASN][1000 genomes]
rs4658290	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4658291	0.80[ASN][1000 genomes]
rs4658294	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4658298	1.00[JPT][hapmap]
rs4658299	1.00[JPT][hapmap]
rs4658300	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs488849	1.00[JPT][hapmap]
rs490800	1.00[JPT][hapmap]
rs492164	1.00[JPT][hapmap]
rs493595	1.00[JPT][hapmap]
rs4949888	1.00[JPT][hapmap]
rs504606	1.00[JPT][hapmap]
rs506375	1.00[JPT][hapmap]
rs507452	1.00[JPT][hapmap]
rs511546	1.00[JPT][hapmap]
rs515280	1.00[JPT][hapmap]
rs519932	1.00[JPT][hapmap]
rs527412	1.00[JPT][hapmap]
rs529135	1.00[JPT][hapmap]
rs534547	1.00[JPT][hapmap]
rs547699	1.00[JPT][hapmap]
rs553861	1.00[JPT][hapmap]
rs556980	1.00[JPT][hapmap]
rs563113	1.00[JPT][hapmap]
rs563606	1.00[JPT][hapmap]
rs569593	1.00[JPT][hapmap]
rs570368	1.00[JPT][hapmap]
rs573044	1.00[JPT][hapmap]
rs575805	1.00[JPT][hapmap]
rs6603962	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6603971	0.80[ASN][1000 genomes]
rs6604080	1.00[JPT][hapmap]
rs6604082	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6604088	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6604090	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6661384	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6663118	0.81[ASN][1000 genomes]
rs6663278	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6668803	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6677184	0.80[ASN][1000 genomes]
rs6684317	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6689366	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6692287	0.82[EUR][1000 genomes]
rs6699855	1.00[JPT][hapmap]
rs6702267	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs733012	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs745793	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7511656	0.90[ASN][1000 genomes]
rs7511669	0.90[ASN][1000 genomes]
rs7517541	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7518974	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7520275	0.96[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7522081	0.90[ASN][1000 genomes]
rs7529835	0.81[ASN][1000 genomes]
rs7533077	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7539757	0.80[ASN][1000 genomes]
rs7541482	0.80[ASN][1000 genomes]
rs7542358	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7542373	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7543947	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7545076	1.00[JPT][hapmap]
rs912794	0.81[EUR][1000 genomes]
rs9440085	0.84[EUR][1000 genomes]
rs981583	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9943178	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv530046	chr1:92277460-92799794	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv871508	chr1:92478130-92781579	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92662800-92667200	Weak transcription	Dnd41	blood
2	chr1:92666800-92667400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr1:92666800-92668400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:92666800-92669200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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