Variant report

Variant	rs1872282
Chromosome Location	chr8:107776199-107776200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107775742..107777895-chr8:107793732..107796183,2	MCF-7	breast:
2	chr22:20745968..20748924-chr8:107775858..107777888,2	MCF-7	breast:
3	chr8:107774998..107776443-chr8:107844921..107846410,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185252	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10086709	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10087077	0.89[EUR][1000 genomes]
rs10088694	0.85[CHB][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10089357	0.85[EUR][1000 genomes]
rs10089618	0.83[EUR][1000 genomes]
rs10089890	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10090534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10091390	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10091611	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10092665	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10096751	0.82[TSI][hapmap]
rs10099361	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10100839	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10101102	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10102112	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10104941	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10106834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10108240	1.00[CEU][hapmap];0.96[GIH][hapmap];0.83[JPT][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs10109609	1.00[TSI][hapmap]
rs10110610	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10283128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10283130	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10505094	0.83[TSI][hapmap]
rs1115200	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs11989387	0.83[TSI][hapmap]
rs12543558	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12544138	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12547372	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12547608	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12548149	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13254031	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13255878	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13259080	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13268490	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1564117	0.83[TSI][hapmap]
rs16875002	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16875065	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875066	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035515	0.87[EUR][1000 genomes]
rs2126580	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28422868	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28808577	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28921395	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35108468	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35499727	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35919651	0.82[EUR][1000 genomes]
rs36011510	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3736179	0.85[EUR][1000 genomes]
rs3779996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59316573	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7461484	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9297385	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
2	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
3	chr8:107753600-107777400	Weak transcription	HUVEC	blood vessel
4	chr8:107755800-107777800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr8:107756400-107777800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:107756600-107777400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:107756600-107777400	Weak transcription	Psoas Muscle	Psoas
8	chr8:107756600-107777600	Weak transcription	Fetal Brain Female	brain
9	chr8:107761400-107777600	Weak transcription	Fetal Stomach	stomach
10	chr8:107765400-107777200	Weak transcription	HSMM	muscle
11	chr8:107771200-107776200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr8:107772600-107777400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:107775200-107776200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:107775200-107776200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:107775200-107776200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:107775200-107776200	Enhancers	Fetal Lung	lung
17	chr8:107775200-107776200	Enhancers	NHDF-Ad	bronchial
18	chr8:107775400-107777400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:107775400-107777400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:107775400-107777400	Weak transcription	Brain Angular Gyrus	brain
21	chr8:107775400-107777400	Weak transcription	Left Ventricle	heart
22	chr8:107775600-107776200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr8:107775600-107777400	Weak transcription	Stomach Mucosa	stomach
24	chr8:107775800-107777400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:107775800-107777400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr8:107775800-107777400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr8:107775800-107777400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr8:107775800-107777400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr8:107775800-107777400	Weak transcription	Fetal Intestine Large	intestine
30	chr8:107775800-107777400	Weak transcription	NHLF	lung
31	chr8:107775800-107777400	Weak transcription	Osteobl	bone
32	chr8:107776000-107776200	Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr8:107776000-107777000	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr8:107776000-107777200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr8:107776000-107777200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:107776000-107777200	Weak transcription	Liver	Liver
37	chr8:107776000-107777200	Weak transcription	Fetal Heart	heart
38	chr8:107776000-107777200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr8:107776000-107777200	Weak transcription	Right Atrium	heart
40	chr8:107776000-107777400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr8:107776000-107777400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr8:107776000-107777400	Weak transcription	Adipose Nuclei	Adipose
43	chr8:107776000-107777400	Weak transcription	Brain Anterior Caudate	brain
44	chr8:107776000-107777400	Weak transcription	Brain Hippocampus Middle	brain
45	chr8:107776000-107777400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr8:107776000-107777400	Weak transcription	Brain Substantia Nigra	brain
47	chr8:107776000-107777400	Weak transcription	Colon Smooth Muscle	Colon
48	chr8:107776000-107777400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr8:107776000-107777400	Weak transcription	Fetal Kidney	kidney
50	chr8:107776000-107777400	Weak transcription	Fetal Muscle Leg	muscle

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