Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:139041004..139044025-chr3:139044466..139046397,3	K562	blood:
2	chr3:139002749..139004310-chr3:139044203..139046434,2	K562	blood:
3	chr3:139041613..139044025-chr3:139044897..139047295,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10804665	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1371340	0.86[EUR][1000 genomes]
rs1599744	1.00[CEU][hapmap]
rs16849065	0.86[EUR][1000 genomes]
rs16849083	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs4243399	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4525826	0.86[EUR][1000 genomes]
rs55735000	0.82[EUR][1000 genomes]
rs56265838	0.86[EUR][1000 genomes]
rs60144275	0.83[EUR][1000 genomes]
rs61525084	0.86[EUR][1000 genomes]
rs6439851	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6788313	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7372667	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7372737	0.83[ASN][1000 genomes]
rs73868351	0.86[EUR][1000 genomes]
rs7621965	0.86[EUR][1000 genomes]
rs7636369	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9824044	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9824195	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9838015	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9864352	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9864740	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005158	chr3:139001736-139073011	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv877543	chr3:139021139-139327261	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv4034	chr3:139034976-139080133	Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139032400-139048000	Weak transcription	Right Atrium	heart
2	chr3:139037400-139047800	Weak transcription	NHDF-Ad	bronchial
3	chr3:139037800-139047600	Weak transcription	Hela-S3	cervix
4	chr3:139038400-139048000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:139041800-139046600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:139042800-139047000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:139043000-139046800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:139043600-139048000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:139044800-139047800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:139044800-139047800	Enhancers	K562	blood
11	chr3:139045000-139048000	Weak transcription	Pancreas	Pancrea

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