Variant report

Variant	rs1874097
Chromosome Location	chr6:151040145-151040146
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:151032065..151034026-chr6:151038847..151040382,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1494308	0.91[YRI][hapmap]
rs1874096	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6557082	0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6557083	0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6557087	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6905228	0.92[EUR][1000 genomes]
rs6919871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7776166	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151021600-151040600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:151026800-151043600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:151029400-151041800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:151033600-151040200	Weak transcription	Fetal Stomach	stomach
5	chr6:151033600-151042000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:151033600-151050200	Weak transcription	Lung	lung
7	chr6:151034000-151040200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:151034200-151040600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:151034200-151041800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:151034200-151042000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:151034400-151041000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:151034400-151041200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:151034400-151042000	Weak transcription	Brain Germinal Matrix	brain
14	chr6:151034800-151040600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:151034800-151040800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:151034800-151040800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:151035000-151040200	Weak transcription	Spleen	Spleen
18	chr6:151035000-151040800	Weak transcription	Fetal Brain Female	brain
19	chr6:151035000-151066400	Weak transcription	Right Ventricle	heart
20	chr6:151035400-151042000	Weak transcription	Right Atrium	heart
21	chr6:151035600-151040200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:151035600-151040200	Weak transcription	Fetal Lung	lung
23	chr6:151035600-151041200	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:151035800-151040400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:151035800-151041400	Weak transcription	Fetal Kidney	kidney
26	chr6:151035800-151042000	Weak transcription	Brain Anterior Caudate	brain
27	chr6:151035800-151042000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:151035800-151042000	Weak transcription	Brain Substantia Nigra	brain
29	chr6:151036000-151040200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:151036000-151041200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:151036200-151041400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:151037600-151041000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:151037800-151042200	Weak transcription	Fetal Intestine Large	intestine
34	chr6:151038200-151042000	Weak transcription	Small Intestine	intestine
35	chr6:151038400-151040600	Weak transcription	Primary B cells from cord blood	blood
36	chr6:151038800-151040200	Weak transcription	Fetal Thymus	thymus
37	chr6:151038800-151040600	Weak transcription	Fetal Muscle Leg	muscle
38	chr6:151038800-151042200	Weak transcription	Esophagus	oesophagus
39	chr6:151039000-151040600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:151039000-151041800	Weak transcription	Stomach Mucosa	stomach
41	chr6:151039000-151042000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr6:151039000-151058800	Weak transcription	Gastric	stomach
43	chr6:151039200-151041600	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr6:151039200-151042000	Weak transcription	Placenta	Placenta
45	chr6:151039400-151040200	Weak transcription	Primary B cells from peripheral blood	blood
46	chr6:151039400-151040400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:151039600-151040600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:151039600-151041000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:151039600-151043800	Weak transcription	Thymus	Thymus
50	chr6:151040000-151041600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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