Variant report

Variant	rs1875435
Chromosome Location	chr1:211089156-211089157
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211081640..211084626-chr1:211086454..211089760,4	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10863870	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10863874	0.82[JPT][hapmap];0.83[YRI][hapmap]
rs11119637	0.89[EUR][1000 genomes]
rs11485203	0.83[EUR][1000 genomes]
rs11582507	0.83[YRI][hapmap]
rs1393026	0.87[YRI][hapmap];0.81[EUR][1000 genomes]
rs1501566	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1501567	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501568	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501569	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1539531	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1875438	0.81[AMR][1000 genomes]
rs2221250	0.83[YRI][hapmap]
rs33985151	0.87[YRI][hapmap]
rs61848994	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6669457	0.82[JPT][hapmap]
rs6678283	0.81[JPT][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes]
rs6698448	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7517771	0.81[EUR][1000 genomes]
rs7535286	0.81[EUR][1000 genomes]
rs7536519	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211082800-211091000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:211083000-211089600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:211083000-211091000	Weak transcription	Brain Angular Gyrus	brain
4	chr1:211083000-211091000	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:211083000-211091200	Weak transcription	Brain Substantia Nigra	brain
6	chr1:211083800-211089400	Weak transcription	HSMMtube	muscle
7	chr1:211084600-211089400	Weak transcription	HSMM	muscle
8	chr1:211085400-211089400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:211085800-211091000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:211087600-211091400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:211088400-211091000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:211088600-211089600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:211088600-211090000	Enhancers	Pancreas	Pancrea
14	chr1:211089000-211090000	Enhancers	Liver	Liver

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