Variant report

Variant	rs187572033
Chromosome Location	chr4:56914773-56914774
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:56732780..56733548-chr4:56914397..56915335,2	K562	blood:
2	chr4:56914423..56917343-chr4:56954991..56956586,2	MCF-7	breast:
3	chr4:56902751..56905676-chr4:56913962..56916198,3	MCF-7	breast:
4	chr4:56912197..56914161-chr4:56914438..56916191,2	MCF-7	breast:
5	chr4:56910116..56913071-chr4:56914589..56916091,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3378090	chr4:56914220-56916768	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56914000-56914800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr4:56914000-56916800	Active TSS	H1 Cell Line	embryonic stem cell
3	chr4:56914000-56917000	Active TSS	Cortex derived primary cultured neurospheres	brain
4	chr4:56914000-56917200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr4:56914200-56917000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:56914200-56917200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:56914200-56917400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:56914400-56914800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr4:56914400-56914800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
10	chr4:56914400-56914800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
11	chr4:56914400-56914800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr4:56914400-56914800	Flanking Active TSS	Fetal Brain Female	brain
13	chr4:56914400-56914800	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr4:56914400-56915000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr4:56914400-56915000	Flanking Active TSS	Fetal Brain Male	brain
16	chr4:56914400-56915200	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr4:56914400-56915200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:56914400-56915200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:56914400-56915200	Flanking Active TSS	HUVEC	blood vessel
20	chr4:56914400-56917000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr4:56914400-56917200	Active TSS	Brain Substantia Nigra	brain
22	chr4:56914400-56917400	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr4:56914400-56917800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:56914600-56914800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
25	chr4:56914600-56914800	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:56914600-56914800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr4:56914600-56914800	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:56914600-56914800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr4:56914600-56914800	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
30	chr4:56914600-56914800	Enhancers	Primary B cells from peripheral blood	blood
31	chr4:56914600-56914800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
32	chr4:56914600-56914800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
33	chr4:56914600-56914800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
34	chr4:56914600-56914800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr4:56914600-56914800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr4:56914600-56914800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr4:56914600-56914800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr4:56914600-56914800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
39	chr4:56914600-56914800	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr4:56914600-56914800	Enhancers	Colonic Mucosa	Colon
41	chr4:56914600-56914800	Active TSS	Duodenum Mucosa	Duodenum
42	chr4:56914600-56914800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
43	chr4:56914600-56914800	Bivalent/Poised TSS	Fetal Heart	heart
44	chr4:56914600-56914800	Flanking Active TSS	Fetal Lung	lung
45	chr4:56914600-56914800	Active TSS	Placenta	Placenta
46	chr4:56914600-56914800	Enhancers	Right Ventricle	heart
47	chr4:56914600-56914800	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr4:56914600-56914800	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr4:56914600-56914800	Enhancers	Spleen	Spleen
50	chr4:56914600-56914800	Flanking Bivalent TSS/Enh	A549	lung

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