Variant report

Variant	rs1875986
Chromosome Location	chr5:15869277-15869278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10058620	1.00[AMR][1000 genomes]
rs1354184	1.00[AMR][1000 genomes]
rs1394655	1.00[AMR][1000 genomes]
rs16867814	1.00[AMR][1000 genomes]
rs16867816	1.00[AMR][1000 genomes]
rs1875987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35368404	1.00[AMR][1000 genomes]
rs4360042	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56705466	1.00[AMR][1000 genomes]
rs60482114	1.00[AMR][1000 genomes]
rs7720693	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15851800-15870400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:15861200-15870000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:15865400-15879400	Weak transcription	Aorta	Aorta
4	chr5:15865600-15885000	Weak transcription	Ovary	ovary
5	chr5:15865800-15869600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:15866000-15869800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:15866200-15869600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:15866200-15870800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:15866400-15872600	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links