Variant report

Variant	rs187635815
Chromosome Location	chrX:78394070-78394071
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932683	chrX:78373033-79166725	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869186	chrX:78392001-79166725	Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78389600-78394600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chrX:78390200-78394400	Weak transcription	Primary T cells from cord blood	blood
3	chrX:78391200-78394400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chrX:78393200-78394200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chrX:78393200-78394200	Enhancers	Dnd41	blood
6	chrX:78393400-78395200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chrX:78393400-78396200	Enhancers	Primary B cells from peripheral blood	blood
8	chrX:78393600-78394400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chrX:78393600-78394400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chrX:78393600-78396400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chrX:78393600-78396600	Enhancers	Primary B cells from cord blood	blood
12	chrX:78393600-78396600	Enhancers	Primary hematopoietic stem cells	blood
13	chrX:78393600-78400400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chrX:78393800-78395200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chrX:78393800-78395400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chrX:78393800-78396200	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chrX:78394000-78394200	Enhancers	GM12878-XiMat	blood
18	chrX:78394000-78395400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chrX:78394000-78395400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chrX:78394000-78395600	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chrX:78394000-78396000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chrX:78394000-78396400	Enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links