Variant report

Variant	rs187728196
Chromosome Location	chr1:220440040-220440041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BPNT1-2	chr1:220439327-220441093	NONHSAT009593
2	lnc-BPNT1-2	chr1:220439521-220441057	NONHSAT009594

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4643	chr1:220397642-220442231	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1001681	chr1:220425057-220548325	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv535298	chr1:220425057-220548325	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv3452704	chr1:220436224-220441007	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3452705	chr1:220436262-220440993	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3452706	chr1:220436374-220440886	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv826686	chr1:220439689-220441010	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv945298	chr1:220439798-220441114	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220393000-220441000	Weak transcription	NHDF-Ad	bronchial
2	chr1:220416000-220442600	Weak transcription	Fetal Heart	heart
3	chr1:220423000-220443400	Weak transcription	Psoas Muscle	Psoas
4	chr1:220423400-220443400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:220423400-220443400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:220423600-220440400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:220423800-220442600	Weak transcription	Hela-S3	cervix
8	chr1:220425200-220443400	Weak transcription	HUVEC	blood vessel
9	chr1:220426200-220440200	Weak transcription	Gastric	stomach
10	chr1:220426200-220441800	Weak transcription	Small Intestine	intestine
11	chr1:220426600-220440200	Weak transcription	NHLF	lung
12	chr1:220426600-220440600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:220426600-220443400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:220426600-220443400	Weak transcription	Right Ventricle	heart
15	chr1:220426600-220444400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:220426800-220441800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr1:220426800-220441800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr1:220426800-220442800	Weak transcription	Esophagus	oesophagus
19	chr1:220426800-220443400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr1:220426800-220443400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:220426800-220443400	Weak transcription	Ovary	ovary
22	chr1:220426800-220444000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr1:220426800-220444200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:220426800-220444400	Weak transcription	Colonic Mucosa	Colon
25	chr1:220426800-220445000	Weak transcription	Aorta	Aorta
26	chr1:220426800-220445000	Weak transcription	Pancreas	Pancrea
27	chr1:220427000-220441400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr1:220427000-220442800	Weak transcription	Lung	lung
29	chr1:220427000-220443200	Weak transcription	Thymus	Thymus
30	chr1:220427000-220444200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr1:220427000-220445000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:220427200-220440200	Weak transcription	Liver	Liver
33	chr1:220427600-220443400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr1:220430400-220440600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr1:220431600-220440800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr1:220431800-220440400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr1:220432200-220442400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr1:220434400-220441200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
39	chr1:220434600-220441400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr1:220434800-220444800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr1:220435000-220442200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr1:220435000-220443400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr1:220435200-220443400	Weak transcription	Brain Hippocampus Middle	brain
44	chr1:220435800-220442200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr1:220435800-220442800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr1:220436000-220443200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr1:220436200-220440600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr1:220436200-220442400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr1:220436600-220442400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr1:220436800-220441200	ZNF genes & repeats	Fetal Brain Female	brain

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