Variant report

Variant	rs1877605
Chromosome Location	chr1:94206737-94206738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94203575..94205213-chr1:94206735..94208348,2	K562	blood:
2	chr1:94145960..94147486-chr1:94206281..94208369,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137936	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10489605	0.82[CEU][hapmap]
rs1108528	0.99[AFR][1000 genomes]
rs11164994	0.89[EUR][1000 genomes]
rs12239830	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1467129	0.82[CEU][hapmap]
rs17100397	0.83[EUR][1000 genomes]
rs17304770	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1877604	1.00[CHB][hapmap]
rs2223908	0.86[EUR][1000 genomes]
rs3761913	0.81[EUR][1000 genomes]
rs41292665	0.82[EUR][1000 genomes]
rs57870303	0.89[EUR][1000 genomes]
rs61425457	0.89[EUR][1000 genomes]
rs61781049	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61781051	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61781053	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61781054	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61781055	0.89[EUR][1000 genomes]
rs61781056	0.89[EUR][1000 genomes]
rs61781057	0.86[EUR][1000 genomes]
rs61782162	0.82[EUR][1000 genomes]
rs61782163	0.82[EUR][1000 genomes]
rs61782164	0.81[EUR][1000 genomes]
rs61782398	0.89[EUR][1000 genomes]
rs61782399	0.89[EUR][1000 genomes]
rs61782400	0.86[EUR][1000 genomes]
rs61782403	0.89[EUR][1000 genomes]
rs61782404	0.86[EUR][1000 genomes]
rs61782405	0.86[EUR][1000 genomes]
rs61782410	0.82[EUR][1000 genomes]
rs61782413	0.86[EUR][1000 genomes]
rs61782449	0.80[EUR][1000 genomes]
rs61782450	0.82[EUR][1000 genomes]
rs61782451	0.82[EUR][1000 genomes]
rs61782458	0.81[EUR][1000 genomes]
rs6674149	0.84[EUR][1000 genomes]
rs72723114	0.89[EUR][1000 genomes]
rs72723118	0.90[EUR][1000 genomes]
rs72723125	0.86[EUR][1000 genomes]
rs72723138	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72723157	0.86[EUR][1000 genomes]
rs72723165	0.86[EUR][1000 genomes]
rs72723169	0.82[EUR][1000 genomes]
rs72723178	0.82[EUR][1000 genomes]
rs7523682	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs871436	0.82[CEU][hapmap];0.95[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1877605	GCLM	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94199000-94207000	Enhancers	HSMM	muscle
2	chr1:94199400-94217400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:94200200-94207000	Enhancers	NHDF-Ad	bronchial
4	chr1:94202600-94206800	Enhancers	NHLF	lung
5	chr1:94203000-94206800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:94203200-94206800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:94203400-94206800	Enhancers	Placenta	Placenta
8	chr1:94203600-94206800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:94203800-94207000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:94203800-94207000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr1:94204000-94207000	Enhancers	Adipose Nuclei	Adipose
12	chr1:94204000-94207000	Enhancers	Fetal Muscle Leg	muscle
13	chr1:94204000-94208200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:94204400-94206800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:94204400-94206800	Enhancers	Fetal Muscle Trunk	muscle
16	chr1:94204800-94206800	Enhancers	HSMMtube	muscle
17	chr1:94204800-94207800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:94205000-94209400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr1:94205400-94206800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:94205400-94208000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:94205600-94206800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:94205600-94207000	Enhancers	Fetal Lung	lung
23	chr1:94205600-94207000	Enhancers	Fetal Stomach	stomach
24	chr1:94205800-94206800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:94205800-94206800	Enhancers	Left Ventricle	heart
26	chr1:94205800-94206800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr1:94205800-94207000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:94205800-94209200	Enhancers	HepG2	liver
29	chr1:94206000-94206800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:94206000-94206800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:94206000-94206800	Enhancers	Brain Angular Gyrus	brain
32	chr1:94206000-94206800	Enhancers	Fetal Kidney	kidney
33	chr1:94206000-94206800	Enhancers	Lung	lung
34	chr1:94206000-94206800	Enhancers	Ovary	ovary
35	chr1:94206000-94210600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr1:94206000-94212600	Weak transcription	HMEC	breast
37	chr1:94206200-94206800	Enhancers	Psoas Muscle	Psoas
38	chr1:94206200-94209400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:94206200-94209400	Weak transcription	NHEK	skin
40	chr1:94206200-94211600	Weak transcription	Spleen	Spleen
41	chr1:94206400-94206800	Enhancers	Brain Anterior Caudate	brain
42	chr1:94206400-94206800	Enhancers	Right Atrium	heart
43	chr1:94206600-94209400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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