Variant report

Variant	rs1878877
Chromosome Location	chr15:76620572-76620573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:
2	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
3	chr15:76615262..76617312-chr15:76620441..76621963,2	K562	blood:
4	chr15:76608047..76610382-chr15:76618699..76620905,3	K562	blood:

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10220790	1.00[AMR][1000 genomes]
rs12708522	1.00[ASW][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1533600	1.00[ASW][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs157764	1.00[AMR][1000 genomes]
rs157765	1.00[AMR][1000 genomes]
rs157767	1.00[AMR][1000 genomes]
rs157770	1.00[AMR][1000 genomes]
rs157771	0.83[AMR][1000 genomes]
rs157772	1.00[AMR][1000 genomes]
rs157773	1.00[AMR][1000 genomes]
rs157774	0.88[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs157781	1.00[AMR][1000 genomes]
rs157782	1.00[AMR][1000 genomes]
rs157784	1.00[AMR][1000 genomes]
rs157786	1.00[AMR][1000 genomes]
rs157792	1.00[AMR][1000 genomes]
rs157793	1.00[AMR][1000 genomes]
rs166905	1.00[AMR][1000 genomes]
rs166932	1.00[AMR][1000 genomes]
rs1810347	1.00[AMR][1000 genomes]
rs1814764	1.00[ASW][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs185860	1.00[AMR][1000 genomes]
rs1875886	1.00[AMR][1000 genomes]
rs190782	0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2037306	1.00[AMR][1000 genomes]
rs2176622	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs2244050	1.00[ASW][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs2245180	1.00[ASW][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs2247488	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs2250805	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs2405329	1.00[AMR][1000 genomes]
rs2405330	1.00[AMR][1000 genomes]
rs2405332	1.00[AMR][1000 genomes]
rs2456030	0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456032	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456035	1.00[AMR][1000 genomes]
rs2456036	1.00[AMR][1000 genomes]
rs2456037	0.87[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456038	1.00[AMR][1000 genomes]
rs2456039	1.00[AMR][1000 genomes]
rs2456043	0.83[AMR][1000 genomes]
rs2456044	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs2456056	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs2456058	1.00[AMR][1000 genomes]
rs2456059	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456062	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456064	1.00[ASW][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456068	0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456069	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456077	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2459364	1.00[AMR][1000 genomes]
rs2460141	1.00[AMR][1000 genomes]
rs2460143	1.00[ASW][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs2460145	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs2460149	1.00[AMR][1000 genomes]
rs2460157	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2460159	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469209	1.00[ASW][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469217	1.00[ASW][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469218	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469219	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469220	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469221	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469223	1.00[AMR][1000 genomes]
rs2469536	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469537	0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469540	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469545	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469546	1.00[ASW][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469549	0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469550	0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469551	1.00[AMR][1000 genomes]
rs2469553	1.00[AMR][1000 genomes]
rs2469571	1.00[AMR][1000 genomes]
rs2469572	0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469574	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs2516308	1.00[AMR][1000 genomes]
rs283786	1.00[AMR][1000 genomes]
rs283788	1.00[AMR][1000 genomes]
rs283790	0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs283792	1.00[AMR][1000 genomes]
rs283794	1.00[AMR][1000 genomes]
rs283797	1.00[AMR][1000 genomes]
rs283798	0.83[AMR][1000 genomes]
rs283800	1.00[AMR][1000 genomes]
rs284879	1.00[AMR][1000 genomes]
rs284882	1.00[AMR][1000 genomes]
rs284887	0.88[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs284888	1.00[AMR][1000 genomes]
rs284889	1.00[ASW][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs284890	1.00[AMR][1000 genomes]
rs284894	0.83[AMR][1000 genomes]
rs284900	1.00[AMR][1000 genomes]
rs2938692	1.00[AMR][1000 genomes]
rs2938693	1.00[AMR][1000 genomes]
rs2938694	0.83[AMR][1000 genomes]
rs2938696	1.00[AMR][1000 genomes]
rs2938698	1.00[AMR][1000 genomes]
rs2944379	1.00[AMR][1000 genomes]
rs2944380	1.00[AMR][1000 genomes]
rs2948702	1.00[AMR][1000 genomes]
rs2956872	1.00[AMR][1000 genomes]
rs2957558	1.00[AMR][1000 genomes]
rs2957608	1.00[AMR][1000 genomes]
rs415439	1.00[AMR][1000 genomes]
rs426225	0.83[AMR][1000 genomes]
rs4886797	1.00[AMR][1000 genomes]
rs542148	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs560598	1.00[AMR][1000 genomes]
rs598011	1.00[AMR][1000 genomes]
rs6495202	1.00[AMR][1000 genomes]
rs654416	1.00[AMR][1000 genomes]
rs7164815	1.00[AMR][1000 genomes]
rs8040818	1.00[AMR][1000 genomes]
rs937731	1.00[AMR][1000 genomes]
rs937734	1.00[AMR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76619400-76621000	Enhancers	K562	blood
2	chr15:76619600-76620600	Flanking Active TSS	Hela-S3	cervix
3	chr15:76619600-76620800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:76619800-76620600	Enhancers	Fetal Heart	heart
5	chr15:76619800-76621800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:76620200-76620600	Enhancers	Left Ventricle	heart
7	chr15:76620200-76620600	Enhancers	Right Atrium	heart
8	chr15:76620200-76621000	Enhancers	HSMMtube	muscle
9	chr15:76620400-76620600	Flanking Active TSS	A549	lung

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