The 2.0 version of rSNPBase

Variant report

Variant rs1879586
Chromosome Location chr17:43567337-43567338
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43548200-43567600 Weak transcription Small Intestine intestine
2 chr17:43548400-43567400 Weak transcription Psoas Muscle Psoas
3 chr17:43555600-43567400 Weak transcription H9 Cell Line embryonic stem cell
4 chr17:43556800-43567400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
5 chr17:43560400-43567400 Weak transcription Fetal Muscle Trunk muscle
6 chr17:43561000-43567600 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr17:43561400-43567400 Weak transcription Left Ventricle heart
8 chr17:43564200-43567400 Enhancers Brain Substantia Nigra brain
9 chr17:43564600-43567400 Enhancers Primary B cells from cord blood blood
10 chr17:43565000-43567400 Enhancers Stomach Mucosa stomach
11 chr17:43565600-43567400 Weak transcription Brain Angular Gyrus brain
12 chr17:43566000-43567400 Enhancers Primary T cells fromperipheralblood blood
13 chr17:43566200-43567400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr17:43566200-43567400 Enhancers Primary Natural Killer cells fromperipheralblood blood
15 chr17:43566200-43568400 Active TSS NHEK skin
16 chr17:43566600-43567400 Enhancers Primary B cells from peripheral blood blood
17 chr17:43566600-43567400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
18 chr17:43566600-43567400 Enhancers Primary T helper 17 cells PMA-I stimulated --
19 chr17:43566600-43567400 Enhancers Primary T killer naive cells fromperipheralblood blood
20 chr17:43566600-43567400 Weak transcription Brain Cingulate Gyrus brain
21 chr17:43566600-43567800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
22 chr17:43566600-43568800 Active TSS NHLF lung
23 chr17:43566800-43567400 Enhancers Spleen Spleen
24 chr17:43566800-43568800 Active TSS NHDF-Ad bronchial
25 chr17:43566800-43569000 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr17:43566800-43569000 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
27 chr17:43566800-43569000 Active TSS Rectal Mucosa Donor 29 rectum
28 chr17:43567000-43567400 Flanking Active TSS Muscle Satellite Cultured Cells --
29 chr17:43567000-43567400 Enhancers Gastric stomach
30 chr17:43567000-43567400 Enhancers Lung lung
31 chr17:43567000-43567400 Weak transcription Right Atrium heart
32 chr17:43567000-43567400 Flanking Active TSS HSMM muscle
33 chr17:43567000-43567600 Enhancers Primary T killer memory cells from peripheral blood blood
34 chr17:43567000-43567600 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr17:43567000-43567600 Flanking Active TSS Skeletal Muscle Male skeletal muscle
36 chr17:43567000-43567600 Flanking Active TSS Dnd41 blood
37 chr17:43567000-43567600 Active TSS HepG2 liver
38 chr17:43567000-43567800 Flanking Active TSS Primary monocytes fromperipheralblood blood
39 chr17:43567000-43568400 Active TSS HMEC breast
40 chr17:43567000-43569000 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr17:43567000-43569000 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
42 chr17:43567000-43569000 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr17:43567200-43567400 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
44 chr17:43567200-43567400 Enhancers iPS-15b Cell Line embryonic stem cell
45 chr17:43567200-43567400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
46 chr17:43567200-43567400 Flanking Active TSS Primary T cells from cord blood blood
47 chr17:43567200-43567400 Active TSS Primary hematopoietic stem cells blood
48 chr17:43567200-43567400 Enhancers Primary T helper naive cells from peripheral blood blood
49 chr17:43567200-43567400 Enhancers Primary T helper naive cells fromperipheralblood blood
50 chr17:43567200-43567400 Enhancers Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015