Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10952633	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10952634	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1100712	0.92[ASN][1000 genomes]
rs1100717	1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs11771813	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13247972	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6948622	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6956918	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6970702	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs721723	0.93[ASN][1000 genomes]
rs721724	0.93[ASN][1000 genomes]
rs850545	0.95[ASN][1000 genomes]
rs850550	0.93[ASN][1000 genomes]
rs850551	0.91[ASN][1000 genomes]
rs850552	0.95[ASN][1000 genomes]
rs850554	0.95[ASN][1000 genomes]
rs850555	0.95[ASN][1000 genomes]
rs850557	0.95[ASN][1000 genomes]
rs850559	0.95[ASN][1000 genomes]
rs850560	0.95[ASN][1000 genomes]
rs850561	0.95[ASN][1000 genomes]
rs850565	0.93[ASN][1000 genomes]
rs850566	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831180	chr7:145263906-145425845	ZNF genes & repeats Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754040	chr7:145303352-145698352	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2755386	chr7:145303352-145698352	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv889383	chr7:145396141-145549570	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv831182	chr7:145399806-145556489	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145415200-145415800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:145415200-145416000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:145415400-145416000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:145415400-145416000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr7:145415400-145416000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:145415400-145416000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:145415400-145416000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:145415600-145416000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:145415600-145416000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:145415600-145416000	Genic enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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