Variant report

Variant	rs1882440
Chromosome Location	chr2:183984990-183984991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:183976023..183978343-chr2:183982634..183984997,2	K562	blood:
2	chr2:183977930..183980927-chr2:183984054..183985620,2	MCF-7	breast:
3	chr2:183977949..183985615-chr2:183986503..183991971,13	K562	blood:
4	chr2:183981717..183985228-chr2:183986533..183989454,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163002	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10165922	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10168255	0.80[AFR][1000 genomes]
rs10168331	0.80[AFR][1000 genomes]
rs10170163	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10174477	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10183561	0.87[ASN][1000 genomes]
rs10200193	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10201194	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10460315	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10931061	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11692613	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12463411	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12693331	0.87[ASN][1000 genomes]
rs13399265	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13419900	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16823717	0.80[ASN][1000 genomes]
rs16823721	0.82[ASN][1000 genomes]
rs16823970	0.80[ASN][1000 genomes]
rs16823971	0.80[ASN][1000 genomes]
rs16823974	0.80[ASN][1000 genomes]
rs16823976	0.82[ASN][1000 genomes]
rs16824001	0.84[ASN][1000 genomes]
rs2138482	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2138484	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2138485	0.89[ASN][1000 genomes]
rs2176228	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2247840	0.96[ASN][1000 genomes]
rs2368335	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2368354	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2705714	0.93[ASN][1000 genomes]
rs2944346	0.87[ASN][1000 genomes]
rs3748879	0.82[ASN][1000 genomes]
rs4597478	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4666885	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4666887	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55942934	0.82[ASN][1000 genomes]
rs56271556	0.82[ASN][1000 genomes]
rs59041013	0.82[ASN][1000 genomes]
rs61283216	0.82[ASN][1000 genomes]
rs61526412	0.82[ASN][1000 genomes]
rs6434004	0.80[AFR][1000 genomes]
rs6742203	0.87[ASN][1000 genomes]
rs73035651	0.80[ASN][1000 genomes]
rs73036601	0.82[ASN][1000 genomes]
rs7601585	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs867340	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs925805	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1005281	chr2:183803173-184093877	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1003519	chr2:183885544-184015868	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	esv2763287	chr2:183939173-184037893	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv3356302	chr2:183962495-183989877	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183954600-183988400	Weak transcription	Aorta	Aorta
2	chr2:183983600-183988200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:183984400-183988200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:183984400-183988400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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