Variant report

Variant	rs1882488
Chromosome Location	chr12:124373456-124373457
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10773040	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs10773042	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10773043	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10773046	0.82[CEU][hapmap]
rs10846561	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs10846563	0.91[ASN][1000 genomes]
rs10846565	0.93[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10846566	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10846568	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11057374	1.00[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11057375	1.00[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11057378	0.86[ASN][1000 genomes]
rs11057379	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11057380	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11057385	0.95[ASN][1000 genomes]
rs12228611	0.92[ASN][1000 genomes]
rs1317386	0.82[CEU][hapmap]
rs1922257	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7138100	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7300162	0.93[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7314963	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7959043	0.88[ASN][1000 genomes]
rs7960854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7961179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7962016	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124371800-124375000	Weak transcription	Fetal Thymus	thymus
2	chr12:124372000-124374000	Weak transcription	Gastric	stomach
3	chr12:124373200-124374400	Enhancers	Fetal Brain Female	brain
4	chr12:124373200-124377000	Enhancers	Primary neutrophils fromperipheralblood	blood

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