Variant report

Variant	rs1884220
Chromosome Location	chr14:37561114-37561115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:37561103..37563065-chr14:37576715..37579105,2	MCF-7	breast:
2	chr14:37559384..37561307-chr14:37642361..37644125,2	K562	blood:
3	chr14:37560763..37563483-chr14:37564350..37566033,2	MCF-7	breast:
4	chr14:37546643..37550099-chr14:37558000..37561401,3	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1012199	0.82[ASN][1000 genomes]
rs10129152	0.81[ASN][1000 genomes]
rs10132328	1.00[ASN][1000 genomes]
rs10133673	0.91[ASN][1000 genomes]
rs10136238	0.91[ASN][1000 genomes]
rs10141752	0.91[ASN][1000 genomes]
rs10142021	0.91[ASN][1000 genomes]
rs10151092	0.81[ASN][1000 genomes]
rs10220281	0.98[ASN][1000 genomes]
rs10220604	0.92[ASN][1000 genomes]
rs10459480	0.81[ASN][1000 genomes]
rs10483485	0.91[ASN][1000 genomes]
rs12050169	0.97[ASN][1000 genomes]
rs12050463	0.99[ASN][1000 genomes]
rs12889634	1.00[ASN][1000 genomes]
rs17106189	0.91[ASN][1000 genomes]
rs17106209	0.91[ASN][1000 genomes]
rs17106216	0.91[ASN][1000 genomes]
rs17106275	1.00[ASN][1000 genomes]
rs17106290	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106291	1.00[ASN][1000 genomes]
rs17106333	0.82[ASN][1000 genomes]
rs17106404	0.82[ASN][1000 genomes]
rs17106433	0.82[ASN][1000 genomes]
rs17841015	0.91[ASN][1000 genomes]
rs17841017	0.81[ASN][1000 genomes]
rs1884221	0.97[ASN][1000 genomes]
rs1884775	0.91[ASN][1000 genomes]
rs1884777	1.00[ASN][1000 genomes]
rs1950374	0.81[ASN][1000 genomes]
rs1950375	0.81[ASN][1000 genomes]
rs1950376	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950814	0.91[ASN][1000 genomes]
rs1955760	1.00[ASN][1000 genomes]
rs1955761	0.82[ASN][1000 genomes]
rs1955762	0.82[ASN][1000 genomes]
rs1955763	0.81[ASN][1000 genomes]
rs1956423	0.91[ASN][1000 genomes]
rs1956424	0.91[ASN][1000 genomes]
rs1971451	0.81[ASN][1000 genomes]
rs1998121	0.91[ASN][1000 genomes]
rs2057171	1.00[ASN][1000 genomes]
rs2078246	0.81[ASN][1000 genomes]
rs2415379	0.94[ASN][1000 genomes]
rs2415380	0.94[ASN][1000 genomes]
rs2415388	0.81[ASN][1000 genomes]
rs28517624	0.91[ASN][1000 genomes]
rs28593311	0.85[ASN][1000 genomes]
rs4356385	0.95[ASN][1000 genomes]
rs61293305	0.81[ASN][1000 genomes]
rs7140991	0.97[ASN][1000 genomes]
rs7160129	0.81[ASN][1000 genomes]
rs74045463	0.90[ASN][1000 genomes]
rs74045478	1.00[ASN][1000 genomes]
rs8008478	1.00[ASN][1000 genomes]
rs8014186	0.97[ASN][1000 genomes]
rs8019489	0.94[ASN][1000 genomes]
rs8020153	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv564347	chr14:37558794-37590164	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37553400-37562600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:37559800-37562800	Weak transcription	K562	blood
3	chr14:37561000-37561400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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