Variant report

Variant	rs1884221
Chromosome Location	chr14:37563919-37563920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37558524..37560785-chr14:37561161..37564362,3	K562	blood:
2	chr14:37563198..37565090-chr14:38061386..38063484,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129514	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1012199	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10129152	0.83[ASN][1000 genomes]
rs10132328	0.97[ASN][1000 genomes]
rs10133673	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10136238	0.88[ASN][1000 genomes]
rs10141752	0.93[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10142021	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10151092	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs10220281	0.95[ASN][1000 genomes]
rs10220604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10459480	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10483482	1.00[TSI][hapmap]
rs10483485	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[ASN][1000 genomes]
rs11156929	1.00[TSI][hapmap]
rs12050169	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050463	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12232098	1.00[TSI][hapmap]
rs12590281	1.00[TSI][hapmap]
rs12889634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17091939	0.93[CHB][hapmap];1.00[TSI][hapmap]
rs17105957	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs17106031	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs17106189	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17106209	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17106216	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17106275	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17106290	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[ASN][1000 genomes]
rs17106291	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17106309	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs17106333	0.93[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17106347	0.85[CHD][hapmap];0.83[GIH][hapmap]
rs17106393	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17106396	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17106404	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17106433	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17106509	0.93[CHB][hapmap];1.00[TSI][hapmap]
rs17106512	1.00[CHB][hapmap]
rs17106525	0.86[CHB][hapmap]
rs17841015	0.93[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17841017	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1884220	0.97[ASN][1000 genomes]
rs1884775	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1884777	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1950374	0.83[ASN][1000 genomes]
rs1950375	0.83[ASN][1000 genomes]
rs1950376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1950814	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1955760	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1955761	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1955762	0.84[ASN][1000 genomes]
rs1955763	1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1956423	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1956424	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1971451	0.83[ASN][1000 genomes]
rs1998121	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2057171	0.97[ASN][1000 genomes]
rs2078246	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes]
rs2415379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2415380	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2415385	0.85[CHD][hapmap]
rs2415388	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.83[ASN][1000 genomes]
rs28517624	0.88[ASN][1000 genomes]
rs28593311	0.83[ASN][1000 genomes]
rs4356385	0.93[ASN][1000 genomes]
rs4900678	0.85[CHD][hapmap]
rs61293305	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6571789	0.81[ASN][1000 genomes]
rs7140991	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7151524	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs7153409	0.85[CHD][hapmap]
rs7160129	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs74045463	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74045478	0.97[ASN][1000 genomes]
rs8008478	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[ASN][1000 genomes]
rs8014186	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8019489	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs8020153	0.97[ASN][1000 genomes]
rs9888585	0.82[CHD][hapmap];1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv564347	chr14:37558794-37590164	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37561400-37568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:37562800-37564800	Enhancers	K562	blood

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