Variant report

Variant	rs1884521
Chromosome Location	chr20:24137991-24137992
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs127801	0.91[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1884520	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2013711	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2208013	0.94[ASN][1000 genomes]
rs224151	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs224153	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2749424	0.83[EUR][1000 genomes]
rs2890401	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs495354	0.81[CHB][hapmap]
rs6036665	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6036668	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6036670	0.88[ASN][1000 genomes]
rs6049429	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6049432	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6049433	0.80[CEU][hapmap]
rs6049434	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6049435	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6049439	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6049443	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6049446	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6049453	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6049454	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6049455	0.94[ASN][1000 genomes]
rs6049458	0.94[ASN][1000 genomes]
rs6049460	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049461	0.92[ASN][1000 genomes]
rs6049467	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083394	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6083397	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6114503	0.97[ASN][1000 genomes]
rs6114507	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6114508	0.92[ASN][1000 genomes]
rs6114509	0.92[ASN][1000 genomes]
rs761868	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs761869	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs761870	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs858072	0.80[CHB][hapmap]
rs910780	0.92[ASN][1000 genomes]
rs910781	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24133800-24140000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr20:24134400-24140000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:24134400-24146800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:24137400-24139200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr20:24137600-24138000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr20:24137600-24138000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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