Variant report

Variant	rs1885347
Chromosome Location	chr11:35392791-35392792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35385110..35389283-chr11:35389686..35393364,5	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1570225	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv430372	chr11:35376124-35430324	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35385800-35394600	Weak transcription	Left Ventricle	heart
2	chr11:35385800-35394600	Weak transcription	Psoas Muscle	Psoas
3	chr11:35386400-35398600	Weak transcription	Fetal Brain Female	brain
4	chr11:35387600-35392800	Weak transcription	Pancreas	Pancrea
5	chr11:35388600-35394600	Weak transcription	Right Ventricle	heart
6	chr11:35389000-35406400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:35389200-35408600	Weak transcription	Aorta	Aorta
8	chr11:35389800-35394400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:35389800-35398400	Weak transcription	NHLF	lung
10	chr11:35389800-35398400	Weak transcription	Osteobl	bone
11	chr11:35390400-35401800	Weak transcription	Right Atrium	heart
12	chr11:35390600-35392800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:35390600-35393000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:35390600-35393800	Weak transcription	NHDF-Ad	bronchial
15	chr11:35390600-35399000	Weak transcription	Brain Substantia Nigra	brain
16	chr11:35390600-35401800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:35390800-35392800	Weak transcription	Brain Angular Gyrus	brain
18	chr11:35390800-35394600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:35390800-35394600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:35390800-35395000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:35391000-35393400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:35391000-35394600	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:35391000-35395000	Weak transcription	Fetal Heart	heart
24	chr11:35391800-35394600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr11:35392400-35395400	Enhancers	Brain Cingulate Gyrus	brain
26	chr11:35392400-35402600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:35392600-35392800	Enhancers	Brain Anterior Caudate	brain
28	chr11:35392600-35393000	Enhancers	Gastric	stomach

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