Variant report

Variant	rs1885531
Chromosome Location	chr1:152480233-152480234
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:152475128..152477150-chr1:152479048..152480719,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1001834	0.96[CEU][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs1053588	0.84[EUR][1000 genomes]
rs1053590	0.96[CEU][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs10888491	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs10888492	0.83[EUR][1000 genomes]
rs10888493	0.83[EUR][1000 genomes]
rs11205014	0.96[CEU][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs11205018	0.95[CEU][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes]
rs11581947	0.96[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs11584191	0.83[EUR][1000 genomes]
rs11590073	0.83[EUR][1000 genomes]
rs12116609	0.83[EUR][1000 genomes]
rs12132469	0.87[CEU][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes]
rs1415432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1538084	0.86[CHB][hapmap];0.95[ASN][1000 genomes]
rs1970283	0.96[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs2105117	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs2146120	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2181172	0.83[EUR][1000 genomes]
rs2282296	0.83[EUR][1000 genomes]
rs3753448	0.84[EUR][1000 genomes]
rs3753451	0.96[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs477621	0.96[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs4845441	0.95[CEU][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs4845442	0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs4845443	0.83[EUR][1000 genomes]
rs4845779	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs4845780	0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs4845782	0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs4845783	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4845784	0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs488393	0.96[CEU][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs491077	0.80[EUR][1000 genomes]
rs493133	0.96[CEU][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs498184	0.84[EUR][1000 genomes]
rs499697	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs525960	0.80[EUR][1000 genomes]
rs526099	0.83[EUR][1000 genomes]
rs545418	0.83[EUR][1000 genomes]
rs548252	0.96[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs564107	0.80[EUR][1000 genomes]
rs569032	0.81[EUR][1000 genomes]
rs6587679	0.87[EUR][1000 genomes]
rs6658925	0.96[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs6669608	0.94[ASN][1000 genomes]
rs6671924	0.85[JPT][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916016	chr1:152337775-152590520	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1014393	chr1:152451935-152491693	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2750810	chr1:152453669-152660927	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1012908	chr1:152464844-152517845	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1005553	chr1:152464844-152519197	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv547859	chr1:152466882-152482587	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1013357	chr1:152469744-152519184	Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv1798404	chr1:152472839-152587113	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv1827111	chr1:152472839-152690073	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	esv1830764	chr1:152472839-152690073	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	esv2757755	chr1:152472839-152898153	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
12	esv2758970	chr1:152472839-152898153	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152473200-152480600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:152473800-152480600	Enhancers	HMEC	breast
3	chr1:152475400-152480600	Enhancers	NHEK	skin
4	chr1:152476400-152482400	Weak transcription	A549	lung
5	chr1:152478800-152480400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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