Variant report

Variant	rs1885943
Chromosome Location	chr20:16102316-16102317
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11904993	0.84[ASN][1000 genomes]
rs11905009	0.84[ASN][1000 genomes]
rs1323306	0.83[ASN][1000 genomes]
rs1323308	0.84[ASN][1000 genomes]
rs1323309	0.84[ASN][1000 genomes]
rs1535597	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17726942	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1830694	0.85[ASN][1000 genomes]
rs1885940	0.82[ASN][1000 genomes]
rs1969773	0.82[ASN][1000 genomes]
rs1969775	0.81[ASN][1000 genomes]
rs2224735	0.84[ASN][1000 genomes]
rs2256065	0.84[ASN][1000 genomes]
rs2486224	0.84[ASN][1000 genomes]
rs2788924	0.84[ASN][1000 genomes]
rs2788925	0.84[ASN][1000 genomes]
rs2788926	0.84[ASN][1000 genomes]
rs35828530	0.84[ASN][1000 genomes]
rs4142099	0.85[EUR][1000 genomes]
rs6034387	0.84[ASN][1000 genomes]
rs6034388	0.84[ASN][1000 genomes]
rs6034389	0.84[ASN][1000 genomes]
rs6034390	0.84[ASN][1000 genomes]
rs6034391	0.84[ASN][1000 genomes]
rs6043732	0.81[ASN][1000 genomes]
rs6043733	0.81[ASN][1000 genomes]
rs6043734	0.81[ASN][1000 genomes]
rs6043735	0.82[ASN][1000 genomes]
rs6043736	0.82[ASN][1000 genomes]
rs6043737	0.84[ASN][1000 genomes]
rs6043738	0.84[ASN][1000 genomes]
rs6043739	0.84[ASN][1000 genomes]
rs6043740	0.84[ASN][1000 genomes]
rs6043741	0.84[ASN][1000 genomes]
rs6043742	0.81[ASN][1000 genomes]
rs6043753	0.86[EUR][1000 genomes]
rs6075014	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6075015	0.83[EUR][1000 genomes]
rs6075017	0.84[EUR][1000 genomes]
rs6075018	0.85[EUR][1000 genomes]
rs6075019	0.85[EUR][1000 genomes]
rs6080128	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6080131	0.84[EUR][1000 genomes]
rs6080134	0.85[EUR][1000 genomes]
rs6105528	0.84[ASN][1000 genomes]
rs6110905	0.85[EUR][1000 genomes]
rs6110907	0.84[ASN][1000 genomes]
rs6110910	0.84[ASN][1000 genomes]
rs6135675	0.84[ASN][1000 genomes]
rs8114080	0.82[ASN][1000 genomes]
rs8114278	0.84[ASN][1000 genomes]
rs8121051	0.84[ASN][1000 genomes]
rs992606	0.84[ASN][1000 genomes]
rs994219	0.82[ASN][1000 genomes]
rs994220	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3424095	chr20:16094018-16103817	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	n/a
6	esv3439085	chr20:16094028-16103826	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16088400-16106000	Weak transcription	Psoas Muscle	Psoas
2	chr20:16098000-16103600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr20:16100200-16102600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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