Variant report

Variant	rs1885958
Chromosome Location	chr6:164171123-164171124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164164066..164167011-chr6:164170527..164172238,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10945917	1.00[ASN][1000 genomes]
rs1465134	0.90[ASN][1000 genomes]
rs1885957	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209028	0.95[ASN][1000 genomes]
rs4235948	0.95[ASN][1000 genomes]
rs4709006	0.82[ASN][1000 genomes]
rs4709007	0.82[ASN][1000 genomes]
rs4709008	0.82[ASN][1000 genomes]
rs4709009	1.00[ASN][1000 genomes]
rs4709010	1.00[ASN][1000 genomes]
rs4709012	0.95[ASN][1000 genomes]
rs4709748	0.82[ASN][1000 genomes]
rs4709754	0.95[ASN][1000 genomes]
rs6455915	0.82[ASN][1000 genomes]
rs6455916	1.00[ASN][1000 genomes]
rs6931768	0.82[ASN][1000 genomes]
rs7741441	1.00[ASN][1000 genomes]
rs7742234	0.82[ASN][1000 genomes]
rs7765631	0.82[ASN][1000 genomes]
rs7766449	1.00[ASN][1000 genomes]
rs9295229	0.95[ASN][1000 genomes]
rs9347782	1.00[ASN][1000 genomes]
rs9364700	0.82[ASN][1000 genomes]
rs9365603	1.00[ASN][1000 genomes]
rs9458892	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164163200-164178400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164166800-164173600	Enhancers	Fetal Heart	heart
3	chr6:164167400-164171600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:164167400-164171600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:164167400-164172000	Weak transcription	HSMMtube	muscle
6	chr6:164167800-164171400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:164167800-164171600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:164167800-164177200	Weak transcription	HSMM	muscle
9	chr6:164168400-164172800	Enhancers	Fetal Muscle Leg	muscle
10	chr6:164168600-164171200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:164168600-164171800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:164169200-164172600	Enhancers	Brain Germinal Matrix	brain
13	chr6:164169600-164172000	Enhancers	Right Atrium	heart
14	chr6:164169800-164171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:164170000-164171600	Enhancers	Primary T cells fromperipheralblood	blood
16	chr6:164170000-164172000	Bivalent Enhancer	Fetal Stomach	stomach
17	chr6:164170200-164171400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:164170200-164171400	Weak transcription	Right Ventricle	heart
19	chr6:164170200-164171800	Enhancers	Primary T cells from cord blood	blood
20	chr6:164170400-164171200	Weak transcription	Fetal Brain Male	brain
21	chr6:164170400-164171400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:164170400-164171400	Weak transcription	Left Ventricle	heart
23	chr6:164170600-164171400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:164170800-164171200	Enhancers	Brain Hippocampus Middle	brain
25	chr6:164170800-164171400	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:164171000-164171600	Enhancers	Brain Cingulate Gyrus	brain
27	chr6:164171000-164172600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr6:164171000-164172600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:164171000-164172800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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