Variant report

Variant	rs1886982
Chromosome Location	chr6:133670875-133670876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57814773	0.82[AFR][1000 genomes]
rs714178	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9373051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9375957	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9375958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385645	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9389070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9493600	0.82[AFR][1000 genomes]
rs9493601	0.82[AFR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133662200-133679200	Weak transcription	Psoas Muscle	Psoas
2	chr6:133664600-133672400	Weak transcription	Hela-S3	cervix
3	chr6:133665000-133672600	Weak transcription	A549	lung
4	chr6:133668000-133679200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:133669000-133678600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:133669800-133671600	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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