Variant report

Variant	rs188711764
Chromosome Location	chr1:210855142-210855143
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCNH1-3	chr1:210851657-210855274	NONHSAT009270

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873150	chr1:210808270-210893233	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv468083	chr1:210854815-210876192	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv549123	chr1:210854815-210876192	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210835400-210863200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr1:210837800-210859800	Weak transcription	Right Ventricle	heart
3	chr1:210838000-210880400	Weak transcription	Gastric	stomach
4	chr1:210843600-210855800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:210843800-210857400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:210845000-210857000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr1:210845400-210866000	Weak transcription	Spleen	Spleen
8	chr1:210845800-210857600	Weak transcription	Fetal Intestine Small	intestine
9	chr1:210846000-210865600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:210846200-210862400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr1:210846200-210865800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:210846400-210855600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:210846400-210884600	Weak transcription	Ovary	ovary
14	chr1:210847000-210860200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr1:210847600-210862200	Weak transcription	Brain Angular Gyrus	brain
16	chr1:210847800-210857200	Weak transcription	Aorta	Aorta
17	chr1:210848400-210857000	Strong transcription	HSMM	muscle
18	chr1:210850000-210857000	Weak transcription	Pancreas	Pancrea
19	chr1:210852200-210857800	Strong transcription	HSMMtube	muscle
20	chr1:210852600-210857800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:210852800-210857200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:210852800-210860400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:210853400-210857000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:210853400-210857800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr1:210853800-210856200	Strong transcription	Fetal Stomach	stomach
26	chr1:210853800-210856600	Weak transcription	Thymus	Thymus
27	chr1:210854000-210856200	Enhancers	Fetal Heart	heart
28	chr1:210854200-210856200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr1:210854200-210858000	Enhancers	Fetal Muscle Leg	muscle
30	chr1:210854600-210856000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:210854800-210855400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr1:210854800-210856000	Enhancers	Fetal Muscle Trunk	muscle

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