Variant report

Variant	rs188840169
Chromosome Location	chr8:58405341-58405342
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:48)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:48 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:58405205-58405449	MCF-7	breast:	n/a	n/a
2	CTCF	chr8:58405260-58405410	GM12865	blood:	n/a	n/a
3	RAD21	chr8:58405160-58405558	MCF-7	breast:	n/a	n/a
4	CTCF	chr8:58405211-58405419	T-47D	breast:	n/a	n/a
5	CTCF	chr8:58405241-58405375	Gliobla	brain:	n/a	n/a
6	FOXA1	chr8:58405231-58405490	T-47D	breast:	n/a	n/a
7	CTCF	chr8:58405220-58405370	HBMEC	blood vessel:	n/a	n/a
8	CTCF	chr8:58405200-58405350	RPTEC	kidney:	n/a	n/a
9	CTCF	chr8:58405211-58405409	MCF-7	breast:	n/a	n/a
10	CTCF	chr8:58405080-58405543	MCF-7	breast:	n/a	n/a
11	CTCF	chr8:58405220-58405370	NHLF	lung:	n/a	n/a
12	CTCF	chr8:58405240-58405390	HMF	breast:	n/a	n/a
13	CTCF	chr8:58405240-58405390	HA-sp	spinal cord:	n/a	n/a
14	CTCF	chr8:58405220-58405370	SK-N-SH_RA	brain:	n/a	n/a
15	CTCF	chr8:58405200-58405350	HAc	cerebellar:	n/a	n/a
16	FOXA2	chr8:58405215-58405438	HepG2	liver:	n/a	n/a
17	RAD21	chr8:58405095-58405557	HepG2	liver:	n/a	n/a
18	CTCF	chr8:58405280-58405430	HBMEC	blood vessel:	n/a	n/a
19	CTCF	chr8:58405220-58405370	HPF	lung:	n/a	n/a
20	CTCF	chr8:58405241-58405370	A549	lung:	n/a	n/a
21	CTCF	chr8:58405212-58405383	HepG2	liver:	n/a	n/a
22	CTCF	chr8:58405260-58405410	AG10803	skin:	n/a	n/a
23	RAD21	chr8:58405179-58405452	HepG2	liver:	n/a	n/a
24	CTCF	chr8:58405260-58405410	AG04449	skin:	n/a	n/a
25	CTCF	chr8:58405200-58405350	WERI-Rb-1	eye:	n/a	n/a
26	CTCF	chr8:58405240-58405390	MCF-7	breast:	n/a	n/a
27	CTCF	chr8:58405200-58405350	HRE	kidney:	n/a	n/a
28	RAD21	chr8:58405177-58405510	MCF-7	breast:	n/a	n/a
29	CTCF	chr8:58405193-58405428	MCF-7	breast:	n/a	n/a
30	RAD21	chr8:58405205-58405433	SK-N-SH_RA	brain:	n/a	n/a
31	CTCF	chr8:58405209-58405420	MCF-7	breast:	n/a	n/a
32	CTCF	chr8:58405220-58405370	HFF-Myc	foreskin:	n/a	n/a
33	CTCF	chr8:58405221-58405403	MCF-7	breast:	n/a	n/a
34	RAD21	chr8:58405187-58405440	HepG2	liver:	n/a	n/a
35	CTCF	chr8:58405255-58405365	Kidney_OC	kidney:	n/a	n/a
36	RAD21	chr8:58405229-58405370	SK-N-SH_RA	brain:	n/a	n/a
37	CTCF	chr8:58405240-58405390	BJ	skin:	n/a	n/a
38	CTCF	chr8:58405220-58405370	HepG2	liver:	n/a	n/a
39	CTCF	chr8:58405120-58405459	HepG2	liver:	n/a	n/a
40	CTCF	chr8:58405300-58405450	HFF	foreskin:	n/a	n/a
41	SMC3	chr8:58405219-58405414	HepG2	liver:	n/a	n/a
42	CTCF	chr8:58405200-58405350	MCF-7	breast:	n/a	n/a
43	CTCF	chr8:58405242-58405361	Pancreas_OC	pancreas:	n/a	n/a
44	CTCF	chr8:58405210-58405422	MCF-7	breast:	n/a	n/a
45	CTCF	chr8:58405240-58405390	HCPEpiC	choroid plexus:	n/a	n/a
46	CTCF	chr8:58405260-58405410	HRE	kidney:	n/a	n/a
47	CTCF	chr8:58405182-58405387	HepG2	liver:	n/a	n/a
48	CTCF	chr8:58405218-58405372	ProgFib	skin:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000253821	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758161	chr8:57930392-58474449	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759618	chr8:57930392-58474449	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv890936	chr8:58266339-58564501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524390	chr8:58305969-58572471	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv518178	chr8:58328635-58542880	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1029189	chr8:58336604-58409288	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv831322	chr8:58389416-58551242	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1015600	chr8:58400271-58548970	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1018174	chr8:58404809-58548970	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58404000-58408000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr8:58405200-58405600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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