Variant report

Variant	rs1889096
Chromosome Location	chr6:64474384-64474385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:64062640..64063526-chr6:64474143..64474904,3	MCF-7	breast:
2	chr6:64308123..64308904-chr6:64474005..64474974,3	MCF-7	breast:
3	chr6:64308218..64308885-chr6:64473955..64474904,2	K562	blood:
4	chr6:64289813..64292111-chr6:64473996..64476108,2	K562	blood:
5	chr6:64061577..64062551-chr6:64473988..64474844,2	MCF-7	breast:
6	chr6:64282565..64284253-chr6:64473647..64475499,2	K562	blood:
7	chr6:64061712..64062525-chr6:64473904..64474743,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112245	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10455430	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10485358	0.85[ASN][1000 genomes]
rs1057530	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10755432	0.84[ASN][1000 genomes]
rs10943975	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1212828	0.84[ASN][1000 genomes]
rs12190601	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12198142	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12205302	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12205984	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1575054	0.80[AMR][1000 genomes]
rs170347	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1825208	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1884117	0.84[ASN][1000 genomes]
rs319920	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs319923	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs319924	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs319925	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs321491	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs321494	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs321495	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs368894	0.83[EUR][1000 genomes]
rs450855	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4562122	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4710437	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4710438	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4710440	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4710446	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs504776	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62412950	0.81[ASN][1000 genomes]
rs67875483	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6904818	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6911292	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6921058	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6921180	0.85[ASN][1000 genomes]
rs6932538	0.85[ASN][1000 genomes]
rs9359643	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64467200-64474400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:64474200-64475000	Weak transcription	HepG2	liver

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