Variant report

Variant	rs1889598
Chromosome Location	chr1:71222290-71222291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71216974..71219275-chr1:71222193..71224615,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10889891	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10889892	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11209705	0.87[ASN][1000 genomes]
rs11579908	0.87[ASN][1000 genomes]
rs11803673	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11810467	0.87[ASN][1000 genomes]
rs12023582	0.94[CHB][hapmap]
rs12026456	0.87[ASN][1000 genomes]
rs12040186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12041247	1.00[CHB][hapmap]
rs12048245	1.00[CHB][hapmap]
rs12048393	1.00[CHB][hapmap]
rs12049445	0.87[ASN][1000 genomes]
rs12049500	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141116	1.00[CHB][hapmap]
rs1335002	0.98[ASN][1000 genomes]
rs1591386	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17131473	0.93[CHB][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17131476	0.83[CHB][hapmap]
rs17131485	0.93[CHB][hapmap]
rs17131488	1.00[CHB][hapmap]
rs1932050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068652	0.93[CHB][hapmap]
rs2152121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152122	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152123	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2152126	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2782768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2782769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2782770	1.00[ASN][1000 genomes]
rs2782771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2782772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2782786	1.00[CHB][hapmap]
rs2782787	1.00[CHB][hapmap]
rs2782788	1.00[CHB][hapmap]
rs2820513	1.00[CHB][hapmap]
rs2820540	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2820541	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34087524	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34745168	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35615554	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4320734	0.91[ASN][1000 genomes]
rs55884889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6684573	0.81[CHB][hapmap]
rs74086786	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74086973	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs915220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71221800-71230600	Weak transcription	K562	blood

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