Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71217715..71220280-chr1:71509356..71511477,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10443262	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1108801	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11209697	0.89[EUR][1000 genomes]
rs12022025	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12033260	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12046339	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12729410	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1327451	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1327453	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1327460	0.92[CHB][hapmap];0.95[JPT][hapmap]
rs1409985	0.92[CHB][hapmap];0.95[JPT][hapmap]
rs2225025	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs2257598	0.82[EUR][1000 genomes]
rs2421783	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2421790	0.87[EUR][1000 genomes]
rs34289107	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34384777	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4650085	0.97[ASN][1000 genomes]
rs7530345	0.92[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap]
rs7533733	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs871577	0.97[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1889599	PTGER3	cis	parietal	SCAN
rs1889599	LRRC40	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71218800-71221800	Enhancers	K562	blood

Quick Search: