Variant report

Variant	rs189001777
Chromosome Location	chr10:51052867-51052868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:51045976..51047972-chr10:51051417..51053268,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758219	chr10:50971974-51925166	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	esv2759749	chr10:50971974-51925166	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv428232	chr10:50971974-51925166	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv895379	chr10:51022933-51187793	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv32940	chr10:51051718-51488059	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:51019800-51053400	Weak transcription	Small Intestine	intestine
2	chr10:51024200-51053200	Weak transcription	Fetal Brain Male	brain
3	chr10:51024600-51054800	Weak transcription	Fetal Heart	heart
4	chr10:51028200-51053000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:51028200-51054600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr10:51028400-51053000	Weak transcription	Colonic Mucosa	Colon
7	chr10:51028400-51055000	Weak transcription	Spleen	Spleen
8	chr10:51028400-51056200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:51031000-51053200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:51040000-51053400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:51040400-51053200	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:51040400-51053200	Weak transcription	Esophagus	oesophagus
13	chr10:51040600-51053000	Weak transcription	Brain Substantia Nigra	brain
14	chr10:51040600-51053000	Weak transcription	Gastric	stomach
15	chr10:51040600-51053200	Weak transcription	Brain Angular Gyrus	brain
16	chr10:51040600-51053200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:51040600-51053400	Weak transcription	Brain Anterior Caudate	brain
18	chr10:51040600-51053400	Weak transcription	Pancreas	Pancrea
19	chr10:51040800-51053200	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:51041000-51053200	Weak transcription	Aorta	Aorta
21	chr10:51041000-51054000	Weak transcription	Thymus	Thymus
22	chr10:51041000-51055000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:51043600-51053200	Weak transcription	Stomach Mucosa	stomach
24	chr10:51044400-51053600	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:51045000-51053600	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:51046600-51053600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:51047200-51055000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:51047400-51065600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:51048400-51053200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:51048400-51053400	Weak transcription	Fetal Thymus	thymus
31	chr10:51048400-51053600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr10:51048400-51054800	Weak transcription	Primary B cells from cord blood	blood
33	chr10:51049600-51053600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr10:51050200-51053000	Weak transcription	Osteobl	bone
35	chr10:51050200-51053200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr10:51050200-51054600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:51050200-51060000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:51050200-51068600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr10:51050400-51056200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr10:51050800-51055000	Weak transcription	GM12878-XiMat	blood
41	chr10:51051600-51053200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr10:51051600-51053400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:51051600-51054800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:51051600-51067800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr10:51051800-51053200	Weak transcription	Liver	Liver
46	chr10:51051800-51053200	Weak transcription	NH-A	brain
47	chr10:51051800-51053400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr10:51051800-51053400	Weak transcription	Brain Germinal Matrix	brain
49	chr10:51051800-51053400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr10:51051800-51053400	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links