Variant report

Variant	rs189052519
Chromosome Location	chr13:96478310-96478311
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96471414..96473149-chr13:96476270..96478786,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3509289	chr13:96461000-96505090	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3509290	chr13:96461000-96505090	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832691	chr13:96478098-96659823	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96444400-96485600	Weak transcription	NHDF-Ad	bronchial
2	chr13:96445800-96490000	Weak transcription	HepG2	liver
3	chr13:96452000-96490600	Weak transcription	Fetal Kidney	kidney
4	chr13:96462600-96485600	Weak transcription	Hela-S3	cervix
5	chr13:96465600-96481200	Weak transcription	Psoas Muscle	Psoas
6	chr13:96466200-96480800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr13:96466200-96481400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr13:96466400-96485400	Weak transcription	NHEK	skin
9	chr13:96466400-96486000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr13:96466600-96485800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:96466800-96485800	Weak transcription	Brain Anterior Caudate	brain
12	chr13:96467000-96485200	Weak transcription	HUVEC	blood vessel
13	chr13:96467400-96490800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr13:96468200-96489800	Weak transcription	GM12878-XiMat	blood
15	chr13:96468800-96486000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr13:96475400-96481200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr13:96475800-96485600	Weak transcription	HMEC	breast
18	chr13:96476000-96478600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr13:96476000-96502600	Weak transcription	Fetal Heart	heart
20	chr13:96476400-96489800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr13:96476800-96480000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr13:96477000-96481200	Weak transcription	Brain Substantia Nigra	brain
23	chr13:96477200-96478600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr13:96477200-96479600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr13:96477200-96479800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr13:96477400-96478400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr13:96477400-96478400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr13:96477400-96479800	Strong transcription	HSMM	muscle
29	chr13:96477400-96479800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr13:96477400-96486000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr13:96477800-96479200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr13:96477800-96479400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr13:96478000-96478400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr13:96478000-96478400	Weak transcription	Colonic Mucosa	Colon
35	chr13:96478000-96478600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr13:96478000-96479800	Weak transcription	Fetal Brain Female	brain
37	chr13:96478000-96485400	Weak transcription	A549	lung
38	chr13:96478000-96485600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr13:96478000-96485600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr13:96478000-96486000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr13:96478000-96486000	Weak transcription	Adipose Nuclei	Adipose
42	chr13:96478000-96498200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr13:96478000-96502600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr13:96478000-96502600	Weak transcription	Left Ventricle	heart
45	chr13:96478000-96568400	Weak transcription	Placenta	Placenta
46	chr13:96478200-96478600	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr13:96478200-96479600	Weak transcription	Fetal Intestine Small	intestine
48	chr13:96478200-96479800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr13:96478200-96479800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr13:96478200-96479800	Weak transcription	Right Ventricle	heart

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