Variant report

Variant	rs1890843
Chromosome Location	chr1:210836847-210836848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11119566	0.84[CHD][hapmap];0.92[GIH][hapmap]
rs11119574	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs17016653	0.84[CHD][hapmap];0.92[GIH][hapmap]
rs1970425	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4504959	0.80[CHD][hapmap]
rs4951507	1.00[CEU][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs56723937	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7524897	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv522480	chr1:210779936-210848344	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
3	esv1825229	chr1:210789477-210854976	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	nsv873150	chr1:210808270-210893233	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv873151	chr1:210818347-210846888	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv873152	chr1:210820285-210854815	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210821400-210837000	Weak transcription	Left Ventricle	heart
2	chr1:210827400-210837200	Weak transcription	Right Ventricle	heart
3	chr1:210827600-210837000	Weak transcription	Gastric	stomach
4	chr1:210827600-210843400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:210827600-210847600	Weak transcription	HSMM	muscle
6	chr1:210829000-210853400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:210831600-210837000	Weak transcription	Brain Substantia Nigra	brain
8	chr1:210835400-210837200	Enhancers	Fetal Stomach	stomach
9	chr1:210835400-210838000	Strong transcription	HSMMtube	muscle
10	chr1:210835400-210863200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:210835600-210837200	Enhancers	Fetal Muscle Trunk	muscle
12	chr1:210835800-210837800	Enhancers	Fetal Muscle Leg	muscle
13	chr1:210836200-210837200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:210836400-210838000	Enhancers	Fetal Heart	heart
15	chr1:210836800-210837000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:210836800-210837000	Enhancers	Fetal Kidney	kidney
17	chr1:210836800-210837000	Enhancers	Pancreas	Pancrea
18	chr1:210836800-210837200	Enhancers	GM12878-XiMat	blood
19	chr1:210836800-210837600	Enhancers	Fetal Lung	lung
20	chr1:210836800-210838000	Enhancers	Brain Angular Gyrus	brain
21	chr1:210836800-210838400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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