Variant report

Variant	rs1890901
Chromosome Location	chr13:64009632-64009633
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs11148610	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1156582	0.96[ASN][1000 genomes]
rs1156584	0.96[ASN][1000 genomes]
rs11841149	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12050031	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1340495	0.94[ASN][1000 genomes]
rs1340496	0.96[ASN][1000 genomes]
rs1483885	0.96[ASN][1000 genomes]
rs1819686	0.96[ASN][1000 genomes]
rs1819687	0.96[ASN][1000 genomes]
rs1819688	0.96[ASN][1000 genomes]
rs1856794	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1856795	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1872150	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1905471	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1934732	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2000073	0.96[ASN][1000 genomes]
rs2096000	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2105259	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2324215	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2449700	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2449702	0.83[EUR][1000 genomes]
rs2487122	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2487123	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs483023	0.89[EUR][1000 genomes]
rs4883702	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs512879	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs516428	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs533718	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs544443	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs547515	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs549436	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs574658	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs595258	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs595886	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs596218	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs610957	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs612807	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61523874	0.89[EUR][1000 genomes]
rs617215	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs625930	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs630605	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs644403	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs645430	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs647045	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs656154	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs658767	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68082752	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs693439	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72628009	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72628010	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7328956	0.89[EUR][1000 genomes]
rs7329889	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7981798	0.96[ASN][1000 genomes]
rs9564036	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9564039	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9564042	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9564043	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9564047	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9564058	0.96[ASN][1000 genomes]
rs9570855	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9570856	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9570860	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9570863	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9570864	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9570894	0.96[ASN][1000 genomes]
rs9570895	0.96[ASN][1000 genomes]
rs9570896	0.96[ASN][1000 genomes]
rs9570897	0.96[ASN][1000 genomes]
rs9570898	0.96[ASN][1000 genomes]
rs989912	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045647	chr13:63545468-64082080	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541799	chr13:63545468-64082080	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1039661	chr13:63736333-64287558	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541801	chr13:63736333-64287558	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv900278	chr13:63824231-64020810	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900279	chr13:63831007-64100634	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900284	chr13:63841148-64020810	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv900285	chr13:63841148-64122619	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv900286	chr13:63851090-64050360	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1038480	chr13:63872027-64013864	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv900287	chr13:63875325-64020810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv900288	chr13:63942220-64020810	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv900289	chr13:63942220-64050360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv900290	chr13:63942220-64184453	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1042265	chr13:63945130-64471230	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
16	nsv1046067	chr13:63958458-64118191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv541802	chr13:63958458-64118191	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv900294	chr13:63962844-64020810	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv900295	chr13:63962844-64050360	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv900296	chr13:63962844-64050360	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv900297	chr13:63962844-64088820	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv900298	chr13:63962844-64156606	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv900300	chr13:63969262-64020810	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv900301	chr13:63976723-64020810	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv900302	chr13:63976723-64050360	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv900303	chr13:63976723-64088820	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv900304	chr13:63976723-64133015	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv900305	chr13:63976723-64149339	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv900306	chr13:63976723-64156606	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv900307	chr13:63976723-64160753	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
31	nsv900308	chr13:63976723-64184453	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
32	nsv900309	chr13:63994086-64050360	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv900310	chr13:63996205-64050360	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv917273	chr13:63998155-64344377	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:64002600-64010200	Weak transcription	NHDF-Ad	bronchial
2	chr13:64007400-64010800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:64008000-64010200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr13:64008400-64010400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:64008600-64009800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr13:64008600-64009800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:64008600-64010000	Enhancers	Osteobl	bone
8	chr13:64008600-64010200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:64008800-64009800	Weak transcription	HUVEC	blood vessel
10	chr13:64009200-64011000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr13:64009200-64011600	Enhancers	HMEC	breast
12	chr13:64009200-64012200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:64009400-64010000	Enhancers	NH-A	brain
14	chr13:64009600-64009800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr13:64009600-64011800	Enhancers	Hela-S3	cervix

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