Variant report
| Variant | rs1891661 |
|---|---|
| Chromosome Location | chr1:210986010-210986011 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:210972897..210975038-chr1:210985230..210987192,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs1114880 | 0.85[EUR][1000 genomes] |
| rs1340128 | 0.81[EUR][1000 genomes] |
| rs1343147 | 0.84[EUR][1000 genomes] |
| rs1770214 | 0.84[EUR][1000 genomes] |
| rs1770215 | 0.85[EUR][1000 genomes] |
| rs1770218 | 0.85[EUR][1000 genomes] |
| rs1770220 | 0.88[EUR][1000 genomes] |
| rs1777244 | 0.82[EUR][1000 genomes] |
| rs1777247 | 0.85[EUR][1000 genomes] |
| rs1777252 | 0.85[EUR][1000 genomes] |
| rs1777254 | 0.85[EUR][1000 genomes] |
| rs1777255 | 0.85[EUR][1000 genomes] |
| rs1777256 | 0.85[EUR][1000 genomes] |
| rs1777259 | 0.85[EUR][1000 genomes] |
| rs1777263 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv873148 | chr1:210665583-210994339 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv873153 | chr1:210900481-210994339 | Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv999018 | chr1:210907239-210999306 | Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv832503 | chr1:210948760-211103163 | Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:210977600-210993200 | Weak transcription | HSMM | muscle |
