Variant report

Variant	rs1892075
Chromosome Location	chr1:223915162-223915163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:223898332..223906168-chr1:223910455..223917097,17	K562	blood:
2	chr1:223913291..223915988-chr1:223981454..223983055,2	K562	blood:
3	chr1:223899168..223900850-chr1:223913497..223916272,3	MCF-7	breast:
4	chr1:223914562..223916498-chr1:223920143..223922062,2	K562	blood:
5	chr1:223914702..223917591-chr1:223920131..223923452,6	K562	blood:
6	chr1:223907922..223910776-chr1:223912986..223915507,4	MCF-7	breast:
7	chr1:223913473..223915896-chr1:224022022..224024045,2	K562	blood:
8	chr1:223889048..223892009-chr1:223912186..223915983,3	K562	blood:
9	chr1:223893369..223895448-chr1:223913219..223916092,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000162909	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10753427	1.00[AMR][1000 genomes]
rs10799364	1.00[AMR][1000 genomes]
rs10915854	1.00[AMR][1000 genomes]
rs10916015	1.00[AMR][1000 genomes]
rs1222144	1.00[AMR][1000 genomes]
rs1361915	1.00[AMR][1000 genomes]
rs1539703	1.00[AMR][1000 genomes]
rs16842210	1.00[AMR][1000 genomes]
rs16842251	1.00[AMR][1000 genomes]
rs1857549	1.00[AMR][1000 genomes]
rs1892071	1.00[AMR][1000 genomes]
rs1892074	1.00[AMR][1000 genomes]
rs1977898	1.00[AMR][1000 genomes]
rs2000317	1.00[AMR][1000 genomes]
rs2096343	1.00[AMR][1000 genomes]
rs2154115	1.00[AMR][1000 genomes]
rs2186005	1.00[AMR][1000 genomes]
rs2404288	1.00[AMR][1000 genomes]
rs25655	1.00[AMR][1000 genomes]
rs28370086	1.00[AMR][1000 genomes]
rs28370105	1.00[AMR][1000 genomes]
rs28370108	1.00[AMR][1000 genomes]
rs4653792	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4653866	1.00[AMR][1000 genomes]
rs4653869	1.00[AMR][1000 genomes]
rs6422641	1.00[AMR][1000 genomes]
rs6688648	1.00[AMR][1000 genomes]
rs7538151	1.00[AMR][1000 genomes]
rs7554290	1.00[AMR][1000 genomes]
rs9660081	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832681	chr1:223698048-224002691	Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3361888	chr1:223725597-224114846	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1007380	chr1:223834380-224042190	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv535310	chr1:223834380-224042190	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv34082	chr1:223851018-224144509	Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv873213	chr1:223885843-223924236	Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
7	nsv1008800	chr1:223904653-224061032	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223903600-223922400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:223904400-223922400	Genic enhancers	NHLF	lung
3	chr1:223906200-223915600	Weak transcription	Aorta	Aorta
4	chr1:223906600-223921000	Weak transcription	Fetal Brain Male	brain
5	chr1:223910800-223915600	Genic enhancers	Fetal Muscle Trunk	muscle
6	chr1:223910800-223916400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:223910800-223916800	Genic enhancers	Gastric	stomach
8	chr1:223910800-223919800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:223911600-223915800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:223911800-223917200	Genic enhancers	Muscle Satellite Cultured Cells	--
11	chr1:223912600-223916000	Genic enhancers	Rectal Mucosa Donor 29	rectum
12	chr1:223913000-223916600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:223913200-223915200	Enhancers	Primary B cells from peripheral blood	blood
14	chr1:223913200-223915200	Enhancers	Small Intestine	intestine
15	chr1:223913200-223915400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr1:223913200-223915400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr1:223913200-223915600	Genic enhancers	Fetal Stomach	stomach
18	chr1:223913200-223916000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:223913200-223916200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr1:223913200-223916200	Enhancers	Left Ventricle	heart
21	chr1:223913400-223915200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr1:223913400-223915200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:223913400-223915200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:223913400-223915200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr1:223913400-223915200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:223913400-223915200	Enhancers	Rectal Smooth Muscle	rectum
27	chr1:223913400-223915600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:223913400-223915600	Enhancers	Brain Cingulate Gyrus	brain
29	chr1:223913400-223915600	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr1:223913400-223915600	Enhancers	Lung	lung
31	chr1:223913400-223915800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
32	chr1:223913400-223915800	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr1:223913400-223915800	Genic enhancers	Fetal Muscle Leg	muscle
34	chr1:223913400-223915800	Enhancers	Placenta	Placenta
35	chr1:223913400-223915800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr1:223913400-223915800	Genic enhancers	HSMM	muscle
37	chr1:223913400-223916000	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr1:223913400-223916000	Enhancers	Right Atrium	heart
39	chr1:223913400-223916400	Enhancers	Placenta Amnion	Placenta Amnion
40	chr1:223913400-223916400	Enhancers	Spleen	Spleen
41	chr1:223913600-223915200	Enhancers	Primary T cells from cord blood	blood
42	chr1:223913600-223915200	Enhancers	Fetal Heart	heart
43	chr1:223913600-223915200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr1:223913600-223915400	Enhancers	Primary hematopoietic stem cells	blood
45	chr1:223913600-223915400	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr1:223913600-223915400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr1:223913600-223915400	Enhancers	Duodenum Mucosa	Duodenum
48	chr1:223913600-223915400	Enhancers	Esophagus	oesophagus
49	chr1:223913600-223915400	Enhancers	Fetal Lung	lung
50	chr1:223913600-223915600	Enhancers	Brain Substantia Nigra	brain

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