Variant report

Variant	rs1892122
Chromosome Location	chr1:225066930-225066931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225066484..225067986-chr1:225113709..225116590,2	K562	blood:

rs_ID	r²[population]
rs10399821	0.86[CHB][hapmap]
rs10399941	0.86[CHB][hapmap]
rs10915744	0.82[CHB][hapmap]
rs10915748	0.86[CHB][hapmap]
rs10915749	0.86[CHB][hapmap]
rs10915750	0.86[CHB][hapmap]
rs10915751	0.86[CHB][hapmap];0.91[CHD][hapmap]
rs10915757	0.86[CHB][hapmap];0.91[CHD][hapmap]
rs10915762	0.82[CHB][hapmap]
rs12068731	0.85[CHB][hapmap]
rs12071453	0.86[CHB][hapmap]
rs12073050	0.86[CHB][hapmap];0.91[CHD][hapmap]
rs12086122	0.86[CHB][hapmap]
rs12090624	0.95[ASN][1000 genomes]
rs12093545	0.91[CHD][hapmap]
rs1482278	0.82[CHB][hapmap]
rs16858965	0.82[CHB][hapmap]
rs2128268	0.82[ASW][hapmap];0.87[MKK][hapmap]
rs2244113	0.98[ASN][1000 genomes]
rs2662912	0.95[ASN][1000 genomes]
rs2662915	0.95[ASN][1000 genomes]
rs2802734	0.98[ASN][1000 genomes]
rs2802737	0.95[ASN][1000 genomes]
rs6689287	0.86[CHB][hapmap]
rs6700281	0.86[CHB][hapmap]
rs7527885	0.86[CHB][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs1892122	ENAH	cis	parietal	SCAN
rs1892122	NVL	cis	cerebellum	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225061200-225067200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:225061200-225068800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:225061800-225067000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:225063000-225071600	Weak transcription	Ovary	ovary
5	chr1:225063400-225067200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:225063600-225067200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:225063600-225067200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:225063600-225069800	Weak transcription	Liver	Liver
9	chr1:225063800-225067000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:225063800-225067200	Weak transcription	Fetal Lung	lung
11	chr1:225064000-225067000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:225064000-225067000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:225064000-225067000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr1:225064000-225067200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr1:225064000-225067200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr1:225064000-225067800	Weak transcription	Fetal Intestine Large	intestine
17	chr1:225064000-225069200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:225064200-225067000	Weak transcription	Fetal Intestine Small	intestine
19	chr1:225064200-225067200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr1:225066200-225068600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:225066400-225067800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr1:225066400-225068200	Enhancers	HSMM	muscle
23	chr1:225066400-225068600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:225066400-225069200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:225066400-225070600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:225066600-225068800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:225066600-225068800	Enhancers	HSMMtube	muscle
28	chr1:225066800-225067400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:225066800-225067600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr1:225066800-225067600	Enhancers	Osteobl	bone
31	chr1:225066800-225067800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr1:225066800-225068800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:225066800-225069600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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