Variant report

Variant	rs189232637
Chromosome Location	chrX:78392165-78392166
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932683	chrX:78373033-79166725	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869186	chrX:78392001-79166725	Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78389600-78394600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chrX:78390200-78394400	Weak transcription	Primary T cells from cord blood	blood
3	chrX:78390400-78394000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chrX:78390600-78393400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chrX:78390600-78393800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chrX:78390800-78393600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chrX:78391000-78393600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chrX:78391000-78394000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chrX:78391000-78394000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chrX:78391200-78394000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chrX:78391200-78394400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chrX:78391400-78393400	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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