Variant report

Variant	rs189352742
Chromosome Location	chr15:79163394-79163395
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3312334	chr15:79162451-79167158	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	n/a
5	esv3312335	chr15:79162465-79167154	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79153200-79164600	Weak transcription	A549	lung
2	chr15:79156800-79164400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:79157200-79163400	Weak transcription	HepG2	liver
4	chr15:79161000-79164400	Weak transcription	Adipose Nuclei	Adipose
5	chr15:79161400-79163800	Weak transcription	Placenta	Placenta
6	chr15:79161400-79164600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:79161800-79164600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:79163000-79163800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:79163200-79163400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:79163200-79163400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr15:79163200-79163400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:79163200-79163400	Enhancers	Hela-S3	cervix
13	chr15:79163200-79164000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr15:79163200-79164400	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links