Variant report

Variant	rs1895312
Chromosome Location	chr5:151651865-151651866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10035750	0.93[ASN][1000 genomes]
rs10043946	0.93[ASN][1000 genomes]
rs10055017	0.93[ASN][1000 genomes]
rs10064138	0.93[ASN][1000 genomes]
rs10065021	0.93[ASN][1000 genomes]
rs1023845	0.86[ASN][1000 genomes]
rs1023846	1.00[ASN][1000 genomes]
rs1023847	0.93[ASN][1000 genomes]
rs10515651	0.86[ASN][1000 genomes]
rs1124773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1422927	0.93[ASN][1000 genomes]
rs1574034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17112916	0.93[ASN][1000 genomes]
rs1895313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1895314	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1946487	0.93[ASN][1000 genomes]
rs2034583	0.93[ASN][1000 genomes]
rs28478867	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151649600-151652200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:151650400-151653200	Weak transcription	Left Ventricle	heart
3	chr5:151651400-151657200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:151651600-151653600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:151651800-151653600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:151651800-151656800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:151651800-151657200	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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