Variant report

Variant	rs189531298
Chromosome Location	chr11:16946355-16946356
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16938600..16942869-chr11:16945668..16948073,6	MCF-7	breast:
2	chr11:16939336..16941584-chr11:16944195..16948360,3	K562	blood:
3	chr11:16945639..16949520-chr11:16949584..16951727,4	MCF-7	breast:
4	chr11:16902742..16904813-chr11:16945225..16947664,2	MCF-7	breast:
5	chr11:16940779..16943639-chr11:16945273..16947792,2	K562	blood:

Variant related genes	Relation type
ENSG00000166689	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16943400-16946400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:16944400-16946400	Enhancers	Pancreas	Pancrea
3	chr11:16944400-16946600	Enhancers	Lung	lung
4	chr11:16944600-16946400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:16944800-16946400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:16944800-16946400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
7	chr11:16945000-16947200	Bivalent Enhancer	Fetal Lung	lung
8	chr11:16945000-16947600	Active TSS	Fetal Heart	heart
9	chr11:16945200-16946400	Enhancers	Primary B cells from peripheral blood	blood
10	chr11:16945400-16946400	Flanking Active TSS	Hela-S3	cervix
11	chr11:16945400-16947600	Active TSS	Right Atrium	heart
12	chr11:16945600-16946400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:16945600-16946400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
14	chr11:16945600-16946400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
15	chr11:16945600-16946400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:16945600-16946400	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr11:16945600-16946400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
18	chr11:16945600-16946600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:16945600-16946800	Bivalent Enhancer	Fetal Brain Male	brain
20	chr11:16945600-16947600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:16945600-16947600	Flanking Active TSS	HMEC	breast
22	chr11:16945600-16947800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
23	chr11:16945600-16947800	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr11:16945800-16946400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:16945800-16946400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:16945800-16946400	Enhancers	Liver	Liver
27	chr11:16945800-16946400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
28	chr11:16945800-16946400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
29	chr11:16945800-16946400	Flanking Active TSS	Fetal Intestine Small	intestine
30	chr11:16945800-16946400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr11:16945800-16946400	Flanking Active TSS	A549	lung
32	chr11:16945800-16946600	Flanking Active TSS	GM12878-XiMat	blood
33	chr11:16945800-16946600	Flanking Active TSS	NHEK	skin
34	chr11:16945800-16946800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
35	chr11:16945800-16947200	Bivalent Enhancer	Spleen	Spleen
36	chr11:16945800-16947600	Enhancers	Primary B cells from cord blood	blood
37	chr11:16945800-16948000	Active TSS	Rectal Smooth Muscle	rectum
38	chr11:16946000-16946400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:16946000-16946400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
40	chr11:16946000-16946400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:16946000-16946400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:16946000-16946400	Active TSS	Placenta Amnion	Placenta Amnion
43	chr11:16946000-16946600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
44	chr11:16946000-16946600	Weak transcription	Gastric	stomach
45	chr11:16946000-16946800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
46	chr11:16946000-16946800	Flanking Active TSS	Left Ventricle	heart
47	chr11:16946000-16947200	Bivalent/Poised TSS	Fetal Brain Female	brain
48	chr11:16946000-16947400	Active TSS	Ovary	ovary
49	chr11:16946200-16946400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
50	chr11:16946200-16946400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell

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