Variant report

Variant	rs1897540
Chromosome Location	chr5:145085145-145085146
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145084415..145086296-chr5:145089093..145090802,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10035959	0.97[ASN][1000 genomes]
rs10035998	0.97[ASN][1000 genomes]
rs10038598	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10041421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1019922	0.85[ASN][1000 genomes]
rs1019923	0.83[ASN][1000 genomes]
rs1019925	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1019926	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1025472	0.97[ASN][1000 genomes]
rs11956768	1.00[JPT][hapmap]
rs12518852	0.83[ASN][1000 genomes]
rs13166750	0.83[ASN][1000 genomes]
rs1347123	1.00[ASN][1000 genomes]
rs1347124	1.00[ASN][1000 genomes]
rs1368340	1.00[ASN][1000 genomes]
rs1368341	0.83[ASN][1000 genomes]
rs1368343	0.83[ASN][1000 genomes]
rs1432753	0.90[ASN][1000 genomes]
rs1433028	1.00[ASN][1000 genomes]
rs1529707	0.82[EUR][1000 genomes]
rs1529708	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1619551	1.00[ASN][1000 genomes]
rs1626062	0.97[ASN][1000 genomes]
rs1626734	0.97[ASN][1000 genomes]
rs1654134	0.98[ASN][1000 genomes]
rs1654135	1.00[ASN][1000 genomes]
rs1654143	0.97[ASN][1000 genomes]
rs1654144	0.97[ASN][1000 genomes]
rs1654145	0.97[ASN][1000 genomes]
rs1654146	0.93[ASN][1000 genomes]
rs1654147	0.90[ASN][1000 genomes]
rs1654148	0.87[ASN][1000 genomes]
rs1654150	0.97[ASN][1000 genomes]
rs1654230	1.00[ASN][1000 genomes]
rs1654231	1.00[ASN][1000 genomes]
rs1654232	0.97[ASN][1000 genomes]
rs1654233	0.94[ASN][1000 genomes]
rs1654234	0.97[ASN][1000 genomes]
rs1654235	0.94[ASN][1000 genomes]
rs1654236	0.90[ASN][1000 genomes]
rs1654237	0.90[ASN][1000 genomes]
rs1654238	0.90[ASN][1000 genomes]
rs1654239	0.90[ASN][1000 genomes]
rs1654240	0.90[ASN][1000 genomes]
rs1654242	0.97[ASN][1000 genomes]
rs1654243	0.97[ASN][1000 genomes]
rs1835931	0.90[ASN][1000 genomes]
rs1962863	0.90[ASN][1000 genomes]
rs1962864	0.90[ASN][1000 genomes]
rs1972777	0.81[ASN][1000 genomes]
rs1972778	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2014625	0.90[ASN][1000 genomes]
rs2278378	1.00[JPT][hapmap]
rs2400196	0.97[ASN][1000 genomes]
rs2400197	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2400198	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2436416	0.97[ASN][1000 genomes]
rs28668139	0.82[EUR][1000 genomes]
rs338884	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3903516	0.83[ASN][1000 genomes]
rs4521541	0.83[ASN][1000 genomes]
rs55824632	0.83[ASN][1000 genomes]
rs6580383	0.83[ASN][1000 genomes]
rs6580384	0.83[ASN][1000 genomes]
rs6884968	0.83[ASN][1000 genomes]
rs6896903	0.83[ASN][1000 genomes]
rs7703916	1.00[CEU][hapmap]
rs7721955	0.97[ASN][1000 genomes]
rs872565	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872566	1.00[ASN][1000 genomes]
rs872567	0.82[EUR][1000 genomes]
rs9324990	0.87[EUR][1000 genomes]
rs987806	0.86[ASN][1000 genomes]
rs998158	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv462474	chr5:145068001-145143775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599934	chr5:145068001-145143775	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145060800-145089600	Weak transcription	Gastric	stomach
2	chr5:145068600-145106200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr5:145075400-145090200	Weak transcription	Aorta	Aorta
4	chr5:145076600-145088200	Weak transcription	Right Ventricle	heart
5	chr5:145077000-145091000	Weak transcription	Pancreas	Pancrea
6	chr5:145082000-145106200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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