Variant report

Variant	rs1897545
Chromosome Location	chr5:145149940-145149941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10463270	0.83[CEU][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs12173238	0.81[CEU][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs1654149	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1821250	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs338885	0.83[CEU][hapmap]
rs338887	0.89[TSI][hapmap]
rs338888	0.91[CEU][hapmap];0.95[TSI][hapmap]
rs338891	1.00[CEU][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs338892	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs338893	1.00[CEU][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs338894	0.85[CEU][hapmap];0.87[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs338895	0.93[MKK][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs338896	0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs338897	0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs4304121	0.91[CEU][hapmap]
rs4305683	0.83[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs4460183	0.83[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4628045	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs582130	0.83[EUR][1000 genomes]
rs587224	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs677498	0.83[CEU][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs680626	0.83[CEU][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes]
rs6867440	0.83[CEU][hapmap]
rs6868309	0.80[CHB][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs6871209	0.91[CEU][hapmap]
rs6871842	0.82[CEU][hapmap]
rs6892276	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021851	chr5:145106686-145187560	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145105400-145179000	Weak transcription	Pancreas	Pancrea
2	chr5:145109400-145194400	Weak transcription	Colonic Mucosa	Colon
3	chr5:145111400-145166800	Weak transcription	K562	blood
4	chr5:145114000-145163400	Weak transcription	Small Intestine	intestine
5	chr5:145126800-145155000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:145131000-145156800	Weak transcription	Gastric	stomach
7	chr5:145133000-145154800	Weak transcription	Fetal Lung	lung
8	chr5:145133800-145154600	Weak transcription	Osteobl	bone
9	chr5:145137800-145154400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:145138000-145157800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr5:145139000-145165400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr5:145140000-145157800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr5:145140400-145157200	Weak transcription	Left Ventricle	heart
14	chr5:145140600-145153800	Weak transcription	Ovary	ovary
15	chr5:145140600-145156000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:145141200-145194400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr5:145141600-145155600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:145142400-145162400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr5:145144200-145155200	Weak transcription	HUVEC	blood vessel
20	chr5:145144200-145156800	Weak transcription	Right Ventricle	heart
21	chr5:145144800-145154800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:145145400-145152000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr5:145147200-145154800	Weak transcription	Adipose Nuclei	Adipose
24	chr5:145147200-145155000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr5:145147400-145151400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:145147400-145153200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr5:145147400-145153800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:145147400-145155000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr5:145147400-145155000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr5:145147400-145155000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr5:145147400-145156000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr5:145147400-145157000	Weak transcription	Fetal Stomach	stomach
33	chr5:145147400-145161800	Weak transcription	Lung	lung
34	chr5:145147600-145153000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr5:145147600-145156800	Weak transcription	Fetal Intestine Small	intestine
36	chr5:145148200-145154600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr5:145148400-145154800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:145148800-145152000	Weak transcription	Fetal Intestine Large	intestine
39	chr5:145148800-145166600	Weak transcription	Fetal Heart	heart
40	chr5:145149800-145150200	Strong transcription	Duodenum Mucosa	Duodenum

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