Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1003257	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11932554	0.85[ASN][1000 genomes]
rs13122706	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1364881	1.00[CHB][hapmap];0.85[CHD][hapmap];0.85[ASN][1000 genomes]
rs1425445	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs17340802	1.00[CHB][hapmap];0.85[CHD][hapmap];0.85[ASN][1000 genomes]
rs17425151	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs3851425	1.00[ASN][1000 genomes]
rs4245936	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.82[MEX][hapmap];0.96[MKK][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4956518	1.00[CHB][hapmap]
rs56288735	0.85[ASN][1000 genomes]
rs59074378	0.85[ASN][1000 genomes]
rs60293572	1.00[ASN][1000 genomes]
rs62325721	0.85[ASN][1000 genomes]
rs62325722	0.85[ASN][1000 genomes]
rs62325723	0.85[ASN][1000 genomes]
rs62326020	0.85[ASN][1000 genomes]
rs62326022	1.00[ASN][1000 genomes]
rs62326024	1.00[ASN][1000 genomes]
rs6537024	1.00[CHB][hapmap];0.85[CHD][hapmap];0.85[ASN][1000 genomes]
rs73849462	1.00[ASN][1000 genomes]
rs73849490	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7665647	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9994743	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3388405	chr4:141939352-141941400	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141925200-141942200	Weak transcription	Aorta	Aorta
2	chr4:141929200-141955400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:141934000-141941400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:141937200-141944000	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:141937600-141942800	Weak transcription	Right Atrium	heart
6	chr4:141937800-141941200	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:141938200-141941400	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:141938200-141942800	Weak transcription	Right Ventricle	heart
9	chr4:141938400-141941400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:141938600-141941000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:141938800-141941600	Weak transcription	NHLF	lung
12	chr4:141939200-141940800	Enhancers	Fetal Heart	heart
13	chr4:141939400-141942600	Enhancers	Fetal Brain Male	brain
14	chr4:141939600-141942000	Enhancers	Stomach Smooth Muscle	stomach
15	chr4:141940000-141941000	Weak transcription	Fetal Brain Female	brain
16	chr4:141940000-141941400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:141940000-141941400	Weak transcription	Left Ventricle	heart
18	chr4:141940000-141941400	Weak transcription	Ovary	ovary
19	chr4:141940600-141942000	Flanking Active TSS	Colon Smooth Muscle	Colon
20	chr4:141940600-141943800	Enhancers	Fetal Stomach	stomach

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